C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calmodulin binding transcription activator 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108509 CAMTA2 9606 - 17:4967992-4987652 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348066 CAMTA2-001 4967998-4987652 protein_coding
  ENST00000361571 CAMTA2-002 4967997-4987370 protein_coding
  ENST00000381311 CAMTA2-004 4967997-4987650 protein_coding
  ENST00000414043 CAMTA2-003 4967997-4987112 protein_coding
  ENST00000571831 CAMTA2-009 4981719-4983760 processed_transcript
  ENST00000572192 CAMTA2-014 4968139-4969081 retained_intron
  ENST00000572326 CAMTA2-016 4972951-4978569 processed_transcript
  ENST00000572543 CAMTA2-007 4967997-4987641 protein_coding
  ENST00000573004 CAMTA2-005 4980436-4987632 nonsense_mediated_decay
  ENST00000574442 CAMTA2-013 4968397-4969415 retained_intron
  ENST00000574606 CAMTA2-010 4980618-4986213 protein_coding
  ENST00000574951 CAMTA2-006 4967992-4986234 nonsense_mediated_decay
  ENST00000575192 CAMTA2-012 4974048-4977200 retained_intron
  ENST00000575365 CAMTA2-011 4977143-4979442 processed_transcript
  ENST00000575580 CAMTA2-008 4982802-4983236 retained_intron
  ENST00000576872 CAMTA2-015 4969428-4972793 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348066ENST00000381311ENST00000572192ENST00000572543ENST00000573004ENST00000574442ENST00000574606ENST00000574951ENST00000576872
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348066 N/A N/A 16.491±0.00 0.249±0.00 2.619±0.00 N/A 2.044±0.00 2.162±0.00 0.263±0.00 11.293±0.00 4.455±0.00 3.254±0.18 N/A
ENST00000381311 N/A 8.448±0.00 N/A N/A 0.748±0.00 N/A 8.740±0.00 3.981±0.00 8.045±0.00 9.687±0.00 5.557±1.50 4.225±0.84 11.570±1.89
ENST00000572192 N/A N/A N/A N/A N/A N/A N/A 1.542±0.00 N/A N/A N/A N/A N/A
ENST00000572543 2.442±0.00 N/A 0.805±0.00 N/A N/A 1.984±0.00 N/A 0.564±0.00 N/A N/A 1.296±1.00 N/A N/A
ENST00000573004 N/A N/A 3.742±0.00 N/A N/A 0.761±0.00 N/A N/A 1.525±0.00 N/A N/A N/A N/A
ENST00000574442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.618±0.00 24.920±0.00 62.061±0.00
ENST00000574606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.936±0.00 N/A N/A
ENST00000574951 N/A N/A N/A N/A 3.439±0.00 0.901±0.66 N/A N/A N/A 12.965±0.00 1.980±1.77 N/A 3.317±0.00
ENST00000576872 N/A N/A N/A N/A 1.603±0.00 N/A N/A 1.058±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WD CIL_0004WD_0001 CGP 17:4959226-4987652
CIL_00006G CIL_00006G_0001 CGP 17:4967992-4997610

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008134 IGI transcription factor binding
GO:0014898 IDA cardiac muscle hypertrophy in response to stress
GO:0042826 IDA histone deacetylase binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054200 CAMTA2 calmodulin binding transcription activator 2 protein_coding Danio_rerio
ENSMUSG00000040712 Camta2 calmodulin binding transcription activator 2 protein_coding Mus_musculus

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