C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cholinergic receptor, nicotinic, epsilon (muscle)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108556 CHRNE 9606 - 17:4897774-4903074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000293780 CHRNE-001 4897774-4903074 protein_coding
  ENST00000572438 CHRNE-002 4898057-4901811 retained_intron
  ENST00000575637 CHRNE-003 4901009-4902630 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000293780
Transcript ID Liver
ENST00000293780 3.470±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RG CIL_0001RG_0001 CGP 17:4807096-4898061
CIL_0001R8 CIL_0001R8_0001 CGP 17:4833388-4903074
CIL_0000P4 CIL_0000P4_0001 CGP 17:4897774-4903074

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005892 TAS acetylcholine-gated channel complex
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006812 TAS cation transport
GO:0006936 TAS muscle contraction
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0007271 TAS synaptic transmission, cholinergic
GO:0008324 TAS cation transmembrane transporter activity
GO:0015464 TAS acetylcholine receptor activity
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0042391 IEA regulation of membrane potential
GO:0045211 IEA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034307 chrne cholinergic receptor, nicotinic, epsilon protein_coding Danio_rerio
ENSMUSG00000014609 Chrne cholinergic receptor, nicotinic, epsilon polypeptide protein_coding Mus_musculus

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