C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FtsJ homolog 3 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108592 FTSJ3 9606 - 17:63819433-63830012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000427159 FTSJ3-001 63819433-63827671 protein_coding
  ENST00000577263 FTSJ3-008 63825831-63827098 retained_intron
  ENST00000579569 FTSJ3-007 63825343-63826910 nonsense_mediated_decay
  ENST00000579831 FTSJ3-012 63821429-63823891 nonsense_mediated_decay
  ENST00000580129 FTSJ3-011 63824084-63824595 retained_intron
  ENST00000580272 FTSJ3-017 63825384-63827064 protein_coding
  ENST00000580290 FTSJ3-009 63825927-63827070 retained_intron
  ENST00000580295 FTSJ3-016 63827115-63830012 processed_transcript
  ENST00000580376 FTSJ3-018 63823590-63824386 retained_intron
  ENST00000581209 FTSJ3-015 63825591-63827329 protein_coding
  ENST00000582476 FTSJ3-006 63826072-63827106 retained_intron
  ENST00000583202 FTSJ3-014 63820259-63822023 retained_intron
  ENST00000583901 FTSJ3-013 63820915-63822189 retained_intron
  ENST00000584193 FTSJ3-010 63825343-63826930 nonsense_mediated_decay
  ENST00000584574 FTSJ3-005 63826639-63827647 protein_coding
  ENST00000585145 FTSJ3-004 63826845-63827647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000427159
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000427159 17.116±0.00 16.721±0.00 6.113±4.34 6.633±4.92 11.492±9.03 5.324±0.00 11.414±8.29 5.681±1.43 3.837±1.59 9.122±7.89 21.997±2.18 12.474±2.48 19.233±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012
CIL_0006Q9 CIL_0006Q9_0001 CGP 17:63819433-63832026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000453 IEA enzyme-directed rRNA 2'-O-methylation
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006364 IEA rRNA processing
GO:0008168 IEA methyltransferase activity
GO:0008649 IEA rRNA methyltransferase activity
GO:0030688 IEA preribosome, small subunit precursor
GO:0031167 IEA rRNA methylation
GO:0032259 IEA methylation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076761 ftsj FtsJ homolog 3 (E. coli) protein_coding Danio_rerio
ENSMUSG00000020706 Ftsj3 FtsJ homolog 3 (E. coli) protein_coding Mus_musculus

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