C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000109118 PHF12 9606 - 17:28905250-28951771 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268756 PHF12-002 28912144-28951490 protein_coding
  ENST00000332830 PHF12-001 28905250-28951771 protein_coding
  ENST00000378879 PHF12-007 28910074-28951357 nonsense_mediated_decay
  ENST00000483934 PHF12-003 28923909-28950904 processed_transcript
  ENST00000577226 PHF12-004 28905253-28951307 protein_coding
  ENST00000578900 PHF12-015 28921795-28928290 protein_coding
  ENST00000579036 PHF12-018 28910226-28913094 protein_coding
  ENST00000579563 PHF12-017 28911133-28912786 processed_transcript
  ENST00000582436 PHF12-005 28909570-28950954 retained_intron
  ENST00000582655 PHF12-008 28910055-28926200 processed_transcript
  ENST00000582853 PHF12-014 28924078-28949857 protein_coding
  ENST00000583524 PHF12-006 28913113-28951771 nonsense_mediated_decay
  ENST00000583747 PHF12-012 28927014-28950662 protein_coding
  ENST00000584236 PHF12-011 28924264-28950682 protein_coding
  ENST00000584685 PHF12-010 28924049-28951606 protein_coding
  ENST00000584822 PHF12-016 28913202-28923947 nonsense_mediated_decay
  ENST00000589176 PHF12-019 28906105-28917408 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268756ENST00000332830ENST00000577226ENST00000582436ENST00000582655ENST00000589176
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268756 N/A N/A N/A 0.873±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000332830 3.100±0.00 8.157±0.00 0.652±0.00 2.385±1.74 5.802±0.00 N/A 4.877±0.00 0.859±0.00 2.886±2.35 2.275±1.96 7.266±4.07 3.481±1.81 8.043±3.76
ENST00000577226 0.709±0.00 2.592±0.00 N/A 0.567±0.13 1.532±0.00 0.505±0.00 N/A 0.363±0.00 1.152±0.91 0.777±0.00 1.510±0.47 N/A 1.053±0.00
ENST00000582436 N/A N/A 0.441±0.00 0.762±0.00 0.639±0.00 N/A N/A N/A 0.413±0.00 N/A N/A N/A N/A
ENST00000582655 N/A N/A N/A N/A N/A N/A N/A N/A 1.278±0.00 1.017±0.00 N/A N/A N/A
ENST00000589176 N/A 24.410±0.00 N/A 8.193±0.00 N/A N/A N/A N/A N/A 1.627±0.00 9.564±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WH CIL_0000WH_0002 CGP 17:28897781-28951771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0001222 IEA transcription corepressor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016580 IDA Sin3 complex
GO:0017053 IDA transcriptional repressor complex
GO:0035091 IDA phosphatidylinositol binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074303 phf12a PHD finger protein 12a protein_coding Danio_rerio
ENSDARG00000075509 phf12b PHD finger protein 12b protein_coding Danio_rerio
ENSMUSG00000037791 Phf12 PHD finger protein 12 protein_coding Mus_musculus

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