C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L34
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000109475 RPL34 9606 + 4:108620566-108630412 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000394665 RPL34-002 108620590-108625255 protein_coding
  ENST00000394667 RPL34-001 108620566-108625255 protein_coding
  ENST00000394668 RPL34-003 108620656-108630412 protein_coding
  ENST00000502534 RPL34-006 108620569-108625554 protein_coding
  ENST00000503574 RPL34-004 108620626-108623332 retained_intron
  ENST00000504231 RPL34-007 108622043-108625180 retained_intron
  ENST00000506397 RPL34-005 108620633-108625252 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394667ENST00000394668ENST00000502534
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394667 286.917±0.00 N/A 78.644±0.00 271.595±52.64 213.996±51.49 438.044±41.75 177.408±35.07 402.767±35.54 355.106±108.85 600.855±305.58 276.910±50.96 1051.518±629.40 682.911±179.49 275.806±112.72
ENST00000394668 N/A N/A N/A 40.836±0.00 30.259±0.00 N/A 19.222±0.00 N/A N/A N/A 27.320±0.00 47.200±0.00 N/A N/A
ENST00000502534 275.696±0.00 940.536±0.00 115.826±0.00 49.519±0.00 262.234±158.35 287.793±163.56 N/A N/A 159.530±0.00 96.257±0.00 N/A N/A N/A 273.389±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T5 CIL_0008T5_0001 VISTA 4:108033184-108635877
CIL_000872 CIL_000872_0001 VISTA 4:108310752-108912309

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029500 rpl34 ribosomal protein L34 protein_coding Danio_rerio
ENSMUSG00000062006 Rpl34 ribosomal protein L34 protein_coding Mus_musculus
ENSMUSG00000078128 Gm2178 predicted gene 2178 protein_coding Mus_musculus

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