C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FSHD region gene 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000109536 FRG1 9606 + 4:189940788-189963204 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000226798 FRG1-001 189940788-189963204 protein_coding
  ENST00000505327 FRG1-002 189961082-189963202 processed_transcript
  ENST00000507103 FRG1-003 189960748-189963188 nonsense_mediated_decay
  ENST00000514482 FRG1-005 189941024-189961176 processed_transcript
  ENST00000524583 FRG1-006 189940870-189961884 protein_coding
  ENST00000531991 FRG1-008 189940901-189957502 protein_coding
  ENST00000533157 FRG1-007 189940899-189955150 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000226798ENST00000505327ENST00000507103ENST00000514482ENST00000524583ENST00000531991ENST00000533157
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000226798 7.032±0.00 5.320±0.00 0.448±0.00 5.001±1.03 3.046±2.13 4.016±2.64 1.977±1.77 3.958±2.73 3.837±1.16 2.704±1.54 1.796±1.59 3.971±2.31 4.955±0.55 6.483±1.39
ENST00000505327 6.931±0.00 6.666±0.00 N/A 6.539±0.00 9.634±0.00 8.744±0.00 N/A 4.906±0.00 N/A 3.329±0.00 N/A 8.430±2.24 N/A 15.151±0.00
ENST00000507103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.491±0.00 N/A N/A N/A
ENST00000514482 N/A 1.978±0.00 N/A N/A 1.916±0.00 N/A N/A 1.730±0.00 N/A 1.078±0.00 N/A 3.440±2.53 5.111±0.00 5.786±0.00
ENST00000524583 N/A N/A N/A N/A 0.641±0.00 N/A N/A 0.545±0.00 N/A 1.962±0.27 N/A N/A N/A N/A
ENST00000531991 N/A 2.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.606±0.00 N/A 2.748±0.32 N/A
ENST00000533157 2.943±0.00 N/A N/A 3.687±0.00 3.032±0.00 5.264±0.00 2.601±2.25 N/A 2.478±0.00 N/A N/A 5.223±0.00 7.163±0.00 5.369±0.62

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0007517 IEA muscle organ development
GO:0030674 IEA protein binding, bridging
GO:0044822 IDA poly(A) RNA binding
GO:0051015 IEA actin filament binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056504 FRG1 FSHD region gene 1 protein_coding Danio_rerio
ENSMUSG00000031590 Frg1 FSHD region gene 1 protein_coding Mus_musculus

Loading