C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neural precursor cell expressed, developmentally down-regulated 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111859 NEDD9 9606 - 6:11183298-11382348 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379433 NEDD9-003 11198308-11232658 protein_coding
  ENST00000379446 NEDD9-001 11183298-11232682 protein_coding
  ENST00000397378 NEDD9-010 11213644-11382299 protein_coding
  ENST00000448183 NEDD9-008 11183306-11382314 nonsense_mediated_decay
  ENST00000459670 NEDD9-006 11305066-11382306 processed_transcript
  ENST00000461055 NEDD9-004 11328525-11382318 processed_transcript
  ENST00000468612 NEDD9-005 11248933-11382338 retained_intron
  ENST00000504387 NEDD9-002 11184818-11382348 protein_coding
  ENST00000504634 NEDD9-012 11271446-11382332 processed_transcript
  ENST00000505589 NEDD9-015 11190858-11192567 retained_intron
  ENST00000508546 NEDD9-007 11213722-11382310 protein_coding
  ENST00000508800 NEDD9-009 11352157-11382348 processed_transcript
  ENST00000512665 NEDD9-013 11251264-11382272 retained_intron
  ENST00000513989 NEDD9-014 11213633-11382303 protein_coding
  ENST00000514660 NEDD9-011 11305853-11382308 retained_intron
  ENST00000620854 NEDD9-201 11183301-11232682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379433ENST00000379446ENST00000504387ENST00000620854
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379433 N/A N/A 1.352±0.00 N/A N/A N/A 0.677±0.00 N/A 1.671±0.00 4.043±0.00 1.288±0.00 2.684±0.00 N/A N/A
ENST00000379446 44.313±0.00 12.581±0.00 3.142±0.00 2.505±1.71 11.806±2.44 8.200±5.75 5.975±4.06 14.503±14.24 3.980±1.45 27.543±9.33 3.438±1.58 4.195±1.43 24.035±15.69 6.759±5.40
ENST00000504387 15.695±0.00 5.223±0.00 N/A N/A N/A N/A N/A N/A N/A 54.718±0.00 3.101±0.00 6.146±0.00 12.200±0.00 N/A
ENST00000620854 N/A N/A N/A N/A N/A N/A N/A N/A 1.195±0.00 N/A N/A N/A 11.385±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000385 CIL_000385_0001 CGP 6:11183298-11583524

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 IEA spindle pole
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005819 TAS spindle
GO:0007010 NAS cytoskeleton organization
GO:0007067 IEA mitotic nuclear division
GO:0007155 IEA cell adhesion
GO:0007165 TAS signal transduction
GO:0007229 NAS integrin-mediated signaling pathway
GO:0030054 IEA cell junction
GO:0040008 IEA regulation of growth
GO:0042995 IEA cell projection
GO:0051017 NAS actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058891 nedd9 neural precursor cell expressed, developmentally down-regulated 9 protein_coding Danio_rerio
ENSDARG00000089878 NEDD9 (2 of 2) neural precursor cell expressed, developmentally down-regulated 9 protein_coding Danio_rerio
ENSMUSG00000021365 Nedd9 neural precursor cell expressed, developmentally down-regulated gene 9 protein_coding Mus_musculus

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