C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112335 SNX3 9606 - 6:108211222-108261260 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000230085 SNX3-001 108211222-108261260 protein_coding
  ENST00000349379 SNX3-003 108212005-108261244 protein_coding
  ENST00000368979 SNX3-002 108211513-108261246 nonsense_mediated_decay
  ENST00000426155 SNX3-004 108211513-108260964 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230085ENST00000349379ENST00000368979ENST00000426155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230085 8.519±0.00 13.537±0.00 6.873±0.00 28.856±12.14 14.902±2.77 11.813±0.20 10.239±2.12 14.842±1.95 11.357±5.76 11.196±0.86 6.947±0.54 37.417±15.53 36.020±12.26 21.446±7.18
ENST00000349379 19.839±0.00 35.640±0.00 1.997±0.00 28.673±0.00 51.941±0.00 65.625±0.00 N/A 21.380±15.72 N/A N/A N/A N/A 48.443±0.00 79.880±41.35
ENST00000368979 10.039±0.00 N/A N/A N/A N/A 17.443±0.00 N/A N/A N/A N/A N/A N/A 12.126±0.00 14.071±0.00
ENST00000426155 20.084±0.00 57.415±0.00 N/A 51.939±0.00 76.713±0.00 42.377±38.55 50.114±0.00 63.492±0.00 19.089±0.00 35.448±0.00 29.663±0.00 70.331±17.89 68.362±18.72 64.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0005829 IDA cytosol
GO:0006886 IBA intracellular protein transport
GO:0010008 IDA endosome membrane
GO:0010324 IDA membrane invagination
GO:0019903 IPI protein phosphatase binding
GO:0031901 IDA early endosome membrane
GO:0032266 IDA phosphatidylinositol-3-phosphate binding
GO:0032268 IEA regulation of cellular protein metabolic process
GO:0033157 IEA regulation of intracellular protein transport
GO:0033572 IEA transferrin transport
GO:0035091 IEA phosphatidylinositol binding
GO:0042177 IDA negative regulation of protein catabolic process
GO:0042541 IBA hemoglobin biosynthetic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046597 IDA negative regulation of viral entry into host cell
GO:0051224 IDA negative regulation of protein transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070676 IMP intralumenal vesicle formation
GO:2000642 IDA negative regulation of early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008678 snx3 sorting nexin 3 protein_coding Danio_rerio
ENSMUSG00000019804 Snx3 sorting nexin 3 protein_coding Mus_musculus

Loading