C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-mRNA processing factor 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112739 PRPF4B 9606 + 6:4021267-4064983 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337659 PRPF4B-011 4021326-4061907 protein_coding
  ENST00000461612 PRPF4B-009 4062104-4064983 processed_transcript
  ENST00000463634 PRPF4B-002 4040849-4064983 retained_intron
  ENST00000466185 PRPF4B-007 4051982-4058890 processed_transcript
  ENST00000480058 PRPF4B-001 4021267-4064982 nonsense_mediated_decay
  ENST00000481109 PRPF4B-003 4037419-4064983 nonsense_mediated_decay
  ENST00000490399 PRPF4B-006 4040848-4044226 processed_transcript
  ENST00000490653 PRPF4B-008 4060982-4062069 processed_transcript
  ENST00000494674 PRPF4B-010 4057160-4063556 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337659ENST00000480058ENST00000481109
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337659 4.346±0.00 4.868±0.00 3.584±0.00 3.246±2.05 3.293±0.00 4.297±0.35 2.893±1.28 4.132±1.16 3.125±1.33 4.009±0.07 1.484±1.17 4.546±1.56 3.862±0.72 6.520±1.08
ENST00000480058 N/A 0.912±0.00 1.078±0.00 1.281±0.00 2.483±0.96 2.073±0.91 1.204±0.00 2.795±1.43 1.268±0.19 2.656±0.00 0.615±0.02 4.291±1.51 0.875±0.17 2.444±0.63
ENST00000481109 N/A N/A N/A 1.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.172±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0001 VISTA 6:3643401-4244038
CIL_0003IQ CIL_0003IQ_0001 CGP 6:3849386-4064983
CIL_0003IR CIL_0003IR_0001 CGP 6:4021267-4087344

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0004672 TAS:IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0006468 IEA protein phosphorylation
GO:0008380 TAS RNA splicing
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008784 prpf4ba PRP4 pre-mRNA processing factor 4 homolog Ba protein_coding Danio_rerio
ENSDARG00000040310 prpf4bb PRP4 pre-mRNA processing factor 4 homolog Bb protein_coding Danio_rerio
ENSMUSG00000021413 Prpf4b PRP4 pre-mRNA processing factor 4 homolog B (yeast) protein_coding Mus_musculus

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