C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histidyl-tRNA synthetase 2, mitochondrial
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112855 HARS2 9606 + 5:140691426-140699291 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000230771 HARS2-001 140691426-140699291 protein_coding
  ENST00000448069 HARS2-004 140691614-140698938 protein_coding
  ENST00000502303 HARS2-005 140691468-140695568 processed_transcript
  ENST00000503873 HARS2-008 140691458-140694213 protein_coding
  ENST00000506318 HARS2-007 140691563-140693987 retained_intron
  ENST00000508522 HARS2-003 140691609-140698628 protein_coding
  ENST00000509299 HARS2-009 140691453-140695634 protein_coding
  ENST00000510104 HARS2-002 140691431-140696344 nonsense_mediated_decay
  ENST00000511913 HARS2-006 140691455-140694291 retained_intron
  ENST00000513688 HARS2-011 140693476-140696156 retained_intron
  ENST00000513912 HARS2-010 140691514-140693803 retained_intron
  ENST00000520095 HARS2-012 140691430-140695770 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230771
Transcript ID Adrenal Bladder Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230771 21.714±0.00 4.261±0.00 4.882±0.00 5.238±3.00 18.666±0.00 3.104±0.00 2.798±0.00 6.446±2.00 13.807±6.50 17.595±9.93 17.545±5.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZJ CIL_0006ZJ_0001 CGP 5:140670794-140692024
CIL_0006ZR CIL_0006ZR_0001 CGP 5:140673173-140699291
CIL_0006ZQ CIL_0006ZQ_0001 CGP 5:140691426-140706676

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004821 NAS:IEA histidine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006412 NAS translation
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006427 IEA histidyl-tRNA aminoacylation
GO:0008152 IEA metabolic process
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003693 hars histidyl-tRNA synthetase protein_coding Danio_rerio
ENSMUSG00000019143 Hars2 histidyl-tRNA synthetase 2, mitochondrial (putative) protein_coding Mus_musculus

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