C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113312 TTC1 9606 + 5:160009113-160065543 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000231238 TTC1-001 160009113-160065543 protein_coding
  ENST00000518560 TTC1-005 160043133-160065487 protein_coding
  ENST00000520274 TTC1-004 160038915-160065130 processed_transcript
  ENST00000522073 TTC1-003 160036506-160065511 retained_intron
  ENST00000522793 TTC1-002 160009113-160065511 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000231238ENST00000518560ENST00000522073ENST00000522793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000231238 16.117±0.00 24.709±0.00 2.596±0.00 29.710±15.74 14.495±8.26 14.926±9.53 12.997±8.34 15.398±14.59 6.118±0.31 8.953±3.30 7.120±4.69 13.137±7.99 24.377±2.80 21.671±14.68
ENST00000518560 N/A N/A N/A N/A N/A N/A N/A N/A 6.033±0.00 4.170±0.00 5.661±0.00 N/A N/A N/A
ENST00000522073 N/A N/A N/A N/A N/A N/A 21.746±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000522793 N/A N/A N/A 2.039±0.00 4.994±0.00 3.805±2.40 0.903±0.00 4.487±0.00 4.996±0.31 N/A 1.066±0.00 2.522±0.00 N/A 5.134±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HS CIL_0007HS_0002 CGP 5:160009113-160119423

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005778 IDA peroxisomal membrane
GO:0006457 NAS protein folding
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044567 ttc1 tetratricopeptide repeat domain 1 protein_coding Danio_rerio
ENSMUSG00000041278 Ttc1 tetratricopeptide repeat domain 1 protein_coding Mus_musculus

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