C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 172, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113391 FAM172A 9606 - 5:93618069-94111699 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000395965 FAM172A-001 93618069-94111635 protein_coding
  ENST00000502503 FAM172A-002 93621081-94111699 nonsense_mediated_decay
  ENST00000504768 FAM172A-008 93910696-94074771 processed_transcript
  ENST00000505869 FAM172A-006 93620691-94111648 protein_coding
  ENST00000506398 FAM172A-004 93881311-94074771 retained_intron
  ENST00000509163 FAM172A-005 93620929-94111676 protein_coding
  ENST00000509739 FAM172A-007 93620883-94074720 protein_coding
  ENST00000510445 FAM172A-010 93784195-93881601 retained_intron
  ENST00000511139 FAM172A-011 93776158-93824254 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395965ENST00000506398ENST00000509163ENST00000509739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395965 1.010±0.00 2.938±0.00 1.176±0.00 4.301±0.11 4.061±1.81 1.962±0.76 1.664±0.66 1.961±1.01 5.019±0.00 2.258±0.25 0.847±0.00 2.664±1.36 1.770±0.31 1.770±0.07
ENST00000506398 N/A N/A N/A N/A N/A 3.473±0.00 N/A N/A N/A N/A N/A N/A N/A 2.890±0.00
ENST00000509163 N/A N/A 3.481±0.00 5.470±0.00 7.723±0.00 5.840±0.00 2.915±0.00 2.060±0.00 7.245±0.00 9.286±0.00 1.185±0.50 2.553±1.27 2.190±0.00 N/A
ENST00000509739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.665±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0003 UCNEbase 5:93009012-93909237
CIL_0008KX CIL_0008KX_0001 VISTA 5:93105796-93709037
CIL_00083A CIL_00083A_0001 VISTA 5:93175759-93777511
CIL_0005KH CIL_0005KH_0002 CGP 5:93583337-94111699
CIL_0008SK CIL_0008SK_0001 VISTA 5:93591279-94192616
CIL_0004Z9 CIL_0004Z9_0001 CGP 5:93618069-94111699

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005783 IDA endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052697 fam172a family with sequence similarity 172, member A protein_coding Danio_rerio
ENSMUSG00000064138 Fam172a family with sequence similarity 172, member A protein_coding Mus_musculus

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