C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: S-phase kinase-associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113558 SKP1 9606 - 5:134148935-134177038 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328392 SKP1-008 134157941-134176950 protein_coding
  ENST00000353411 SKP1-001 134148935-134177038 protein_coding
  ENST00000517625 SKP1-004 134157508-134176719 protein_coding
  ENST00000517691 SKP1-013 134157474-134161897 retained_intron
  ENST00000519054 SKP1-011 134158480-134176958 nonsense_mediated_decay
  ENST00000519321 SKP1-003 134158484-134176950 protein_coding
  ENST00000520417 SKP1-006 134160996-134174765 protein_coding
  ENST00000521216 SKP1-009 134157392-134176920 protein_coding
  ENST00000522552 SKP1-002 134157338-134176964 protein_coding
  ENST00000522855 SKP1-005 134157572-134176950 protein_coding
  ENST00000523359 SKP1-007 134173967-134175570 protein_coding
  ENST00000523966 SKP1-010 134157510-134176950 nonsense_mediated_decay
  ENST00000524288 SKP1-012 134173387-134176950 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328392ENST00000353411ENST00000517625ENST00000521216ENST00000522855
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328392 N/A N/A 32.639±0.00 93.498±0.00 N/A 32.748±0.00 27.302±0.00 41.321±0.00 44.474±0.00 86.777±0.00 49.740±13.91 92.803±37.43 165.278±56.71 246.000±0.00
ENST00000353411 4.009±0.00 5.964±0.00 1.887±0.00 9.523±3.93 3.873±1.47 3.258±1.25 1.126±0.00 3.732±2.24 2.411±0.52 4.316±0.61 2.190±0.96 3.859±0.68 N/A 7.127±0.00
ENST00000517625 N/A N/A N/A 42.638±0.00 N/A N/A 73.215±0.00 74.201±0.00 26.391±2.95 56.384±0.00 29.809±14.29 72.379±1.98 53.651±0.00 N/A
ENST00000521216 75.449±0.00 79.920±0.00 N/A 240.959±0.00 109.229±0.00 64.287±48.24 57.506±49.49 52.289±39.31 38.167±0.00 83.984±0.00 40.293±26.13 82.849±27.59 104.274±21.18 123.597±38.20
ENST00000522855 N/A N/A N/A N/A N/A 60.126±0.00 N/A N/A N/A N/A N/A N/A N/A 76.564±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GN CIL_0000GN_0002 CGP 5:134114711-134177038
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007219 TAS Notch signaling pathway
GO:0016032 TAS viral process
GO:0016567 IDA protein ubiquitination
GO:0019005 IDA SCF ubiquitin ligase complex
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031146 IDA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031467 IDA Cul7-RING ubiquitin ligase complex
GO:0031519 IDA PcG protein complex
GO:0035518 IDA histone H2A monoubiquitination
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003151 skp1 S-phase kinase-associated protein 1 protein_coding Danio_rerio
ENSMUSG00000036309 Skp1a S-phase kinase-associated protein 1A protein_coding Mus_musculus

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