C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113597 TRAPPC13 9606 + 5:65624716-65666233 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000231526 TRAPPC13-003 65625040-65666069 protein_coding
  ENST00000399438 TRAPPC13-001 65624716-65666233 protein_coding
  ENST00000415825 TRAPPC13-012 65664119-65664766 retained_intron
  ENST00000438419 TRAPPC13-004 65625034-65664764 protein_coding
  ENST00000504243 TRAPPC13-009 65635340-65660813 nonsense_mediated_decay
  ENST00000504751 TRAPPC13-008 65625045-65658482 nonsense_mediated_decay
  ENST00000505108 TRAPPC13-011 65661716-65664764 retained_intron
  ENST00000505553 TRAPPC13-002 65625045-65664766 protein_coding
  ENST00000508304 TRAPPC13-013 65625069-65652736 retained_intron
  ENST00000509234 TRAPPC13-010 65657971-65664381 retained_intron
  ENST00000512009 TRAPPC13-005 65625004-65666074 retained_intron
  ENST00000520525 TRAPPC13-014 65655634-65661087 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000231526ENST00000399438ENST00000438419ENST00000504243ENST00000505553ENST00000512009
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000231526 1.740±0.00 3.247±0.00 N/A 6.884±0.00 2.481±0.00 2.558±0.00 1.619±0.91 3.173±2.04 1.641±0.17 1.688±0.04 0.988±0.36 1.915±0.71 1.509±0.39 2.502±0.72
ENST00000399438 N/A N/A N/A N/A 1.432±0.00 N/A 0.498±0.00 N/A N/A N/A N/A 0.754±0.12 0.504±0.00 N/A
ENST00000438419 N/A N/A N/A N/A 2.546±0.00 2.284±0.00 2.718±0.00 N/A 1.988±0.00 2.937±0.00 N/A 2.847±0.00 1.216±0.04 3.175±0.00
ENST00000504243 N/A N/A N/A N/A N/A N/A N/A 3.216±0.00 N/A N/A 1.364±0.00 N/A N/A N/A
ENST00000505553 N/A N/A 1.940±0.00 N/A N/A N/A N/A N/A N/A N/A 1.353±0.00 N/A N/A N/A
ENST00000512009 N/A 0.768±0.00 N/A N/A 0.896±0.00 0.682±0.00 0.319±0.00 N/A 0.787±0.00 N/A N/A 0.433±0.18 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G9 CIL_0007G9_0002 CGP 5:65563236-65625975

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033768 trappc13 trafficking protein particle complex 13 protein_coding Danio_rerio
ENSMUSG00000021711 Trappc13 trafficking protein particle complex 13 protein_coding Mus_musculus

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