C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H2A histone family, member Y
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113648 H2AFY 9606 - 5:135333900-135399914 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304332 H2AFY-004 135334383-135399887 protein_coding
  ENST00000312469 H2AFY-002 135334410-135399211 protein_coding
  ENST00000360597 H2AFY-008 135334417-135399222 processed_transcript
  ENST00000423969 H2AFY-003 135334856-135399229 protein_coding
  ENST00000451949 H2AFY-010 135334381-135351544 processed_transcript
  ENST00000504197 H2AFY-007 135360416-135370146 retained_intron
  ENST00000505827 H2AFY-023 135335101-135345987 retained_intron
  ENST00000506218 H2AFY-014 135369481-135399214 retained_intron
  ENST00000506532 H2AFY-019 135369368-135399914 processed_transcript
  ENST00000506671 H2AFY-006 135334473-135399238 nonsense_mediated_decay
  ENST00000507868 H2AFY-017 135350814-135399204 retained_intron
  ENST00000508120 H2AFY-021 135360519-135399206 processed_transcript
  ENST00000508785 H2AFY-015 135359397-135399177 processed_transcript
  ENST00000508962 H2AFY-012 135388917-135399887 processed_transcript
  ENST00000510038 H2AFY-005 135334913-135399884 protein_coding
  ENST00000511494 H2AFY-011 135334435-135347606 retained_intron
  ENST00000511689 H2AFY-001 135333900-135399622 protein_coding
  ENST00000512507 H2AFY-009 135334381-135362901 processed_transcript
  ENST00000513210 H2AFY-016 135359722-135389059 processed_transcript
  ENST00000513268 H2AFY-018 135345690-135350955 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304332ENST00000312469ENST00000423969ENST00000451949ENST00000505827ENST00000510038ENST00000511494ENST00000511689ENST00000512507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304332 25.814±0.00 23.118±0.00 N/A 8.655±5.04 13.683±0.00 21.380±0.00 N/A 14.563±11.60 4.941±0.00 14.802±0.00 N/A 30.223±4.34 32.436±18.13 19.977±0.00
ENST00000312469 24.415±0.00 20.087±0.00 1.516±0.00 16.599±11.86 11.402±0.00 31.171±0.00 20.350±17.56 27.604±0.00 6.798±1.43 17.475±11.17 19.731±14.14 24.113±7.34 27.030±8.43 18.087±5.72
ENST00000423969 49.447±0.00 34.342±0.00 N/A 38.909±0.00 26.787±0.00 N/A N/A N/A N/A 36.278±0.00 N/A N/A N/A N/A
ENST00000451949 N/A N/A N/A N/A 5.959±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505827 N/A N/A 1.216±0.00 N/A N/A N/A 1.691±0.00 1.112±0.00 3.018±0.00 N/A 1.732±0.00 N/A N/A N/A
ENST00000510038 N/A N/A 2.222±0.00 N/A 8.097±0.00 N/A N/A N/A N/A N/A N/A 24.722±7.60 15.303±0.00 N/A
ENST00000511494 N/A N/A N/A N/A N/A 6.501±0.00 N/A 1.453±0.00 N/A N/A N/A N/A N/A N/A
ENST00000511689 N/A N/A N/A N/A N/A N/A N/A 1.303±0.00 N/A N/A N/A 10.433±0.00 N/A N/A
ENST00000512507 N/A 1.963±0.00 1.112±0.00 0.605±0.00 1.912±0.80 1.433±0.00 1.008±0.00 0.634±0.00 2.088±0.00 1.726±0.00 N/A 4.091±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083J CIL_00083J_0001 VISTA 5:135133909-135736454

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000182 IDA rDNA binding
GO:0000786 NAS:IEA nucleosome
GO:0000790 IDA nuclear chromatin
GO:0000793 IEA condensed chromosome
GO:0001739 TAS sex chromatin
GO:0001740 IDA Barr body
GO:0003677 NAS:IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005721 IDA pericentric heterochromatin
GO:0005730 IDA nucleolus
GO:0006334 NAS:IEA nucleosome assembly
GO:0007549 IDA dosage compensation
GO:0010385 IDA double-stranded methylated DNA binding
GO:0016568 IEA chromatin modification
GO:0019901 IPI protein kinase binding
GO:0030291 IMP protein serine/threonine kinase inhibitor activity
GO:0031490 IDA chromatin DNA binding
GO:0033128 IMP negative regulation of histone phosphorylation
GO:0035098 IDA ESC/E(Z) complex
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045814 IMP negative regulation of gene expression, epigenetic
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome
GO:0071169 IMP establishment of protein localization to chromatin
GO:0071901 IMP negative regulation of protein serine/threonine kinase activity
GO:1901837 IGI negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:1902750 IMP negative regulation of cell cycle G2/M phase transition

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053442 h2afy H2A histone family, member Y protein_coding Danio_rerio
ENSMUSG00000015937 H2afy H2A histone family, member Y protein_coding Mus_musculus

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