C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HMG box domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113716 HMGXB3 9606 + 5:150000046-150053142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000502717 HMGXB3-001 150000718-150052823 protein_coding
  ENST00000503427 HMGXB3-002 150000321-150052823 protein_coding
  ENST00000510472 HMGXB3-005 150047485-150050441 retained_intron
  ENST00000513318 HMGXB3-003 150030317-150040823 retained_intron
  ENST00000514469 HMGXB3-004 150027063-150047757 nonsense_mediated_decay
  ENST00000613459 HMGXB3-201 150000046-150053142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000502717ENST00000514469ENST00000613459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000502717 N/A N/A 1.411±0.00 2.849±0.44 3.394±0.00 N/A 0.924±0.00 0.947±0.00 2.242±0.00 1.716±0.00 2.655±0.00 N/A N/A 5.631±0.00
ENST00000514469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.522±0.00 N/A 14.604±0.00
ENST00000613459 5.598±0.00 7.029±0.00 N/A N/A 6.450±0.00 4.343±0.00 4.307±0.00 6.882±0.00 3.673±0.00 4.789±3.49 1.413±0.00 4.842±2.75 7.763±0.63 3.118±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016301 NAS kinase activity
GO:0016310 NAS phosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077823 HMGXB3 HMG box domain containing 3 protein_coding Danio_rerio
ENSMUSG00000024622 Hmgxb3 HMG box domain containing 3 protein_coding Mus_musculus

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