C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: fragile X mental retardation, autosomal homolog 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114416 FXR1 9606 + 3:180868141-180982753 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305586 FXR1-007 180912482-180977155 protein_coding
  ENST00000357559 FXR1-001 180912302-180982753 protein_coding
  ENST00000445140 FXR1-005 180912672-180977155 protein_coding
  ENST00000461044 FXR1-016 180957527-180963081 retained_intron
  ENST00000461801 FXR1-020 180933036-180935196 retained_intron
  ENST00000465551 FXR1-013 180868751-180949250 protein_coding
  ENST00000468861 FXR1-004 180912671-180976545 protein_coding
  ENST00000469882 FXR1-015 180868141-180949326 protein_coding
  ENST00000472339 FXR1-006 180912678-180976553 retained_intron
  ENST00000473375 FXR1-021 180951330-180954105 retained_intron
  ENST00000475315 FXR1-002 180912491-180976579 retained_intron
  ENST00000476672 FXR1-018 180957869-180970661 retained_intron
  ENST00000479176 FXR1-010 180912671-180948192 retained_intron
  ENST00000480918 FXR1-008 180915434-180976378 protein_coding
  ENST00000481383 FXR1-022 180970192-180971816 retained_intron
  ENST00000482125 FXR1-019 180968051-180976282 protein_coding
  ENST00000484042 FXR1-012 180915460-180948742 protein_coding
  ENST00000484790 FXR1-014 180868156-180948783 protein_coding
  ENST00000484958 FXR1-011 180912685-180949339 protein_coding
  ENST00000491062 FXR1-003 180912671-180976418 protein_coding
  ENST00000491674 FXR1-009 180912538-180927813 protein_coding
  ENST00000498658 FXR1-017 180957809-180968405 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305586ENST00000357559ENST00000445140ENST00000468861ENST00000472339ENST00000475315ENST00000476672ENST00000480918ENST00000482125ENST00000491062ENST00000498658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305586 N/A N/A N/A 1.704±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000357559 N/A 1.147±0.00 N/A N/A N/A N/A 0.797±0.00 1.043±0.00 1.986±0.00 2.008±0.00 N/A 1.236±0.05 N/A N/A
ENST00000445140 6.699±0.00 4.896±0.00 N/A 6.765±0.00 9.592±0.00 14.713±0.00 10.080±6.95 5.909±0.00 4.180±1.61 11.236±0.00 40.187±29.04 8.471±4.33 8.985±0.63 19.742±0.00
ENST00000468861 N/A N/A N/A N/A N/A N/A N/A N/A 3.360±0.00 13.659±0.00 N/A N/A N/A N/A
ENST00000472339 8.644±0.00 N/A 6.649±0.00 5.373±1.79 9.388±0.23 4.201±0.00 12.274±7.08 5.656±0.82 6.072±2.98 7.577±0.00 38.212±20.36 8.803±2.36 8.799±3.11 N/A
ENST00000475315 5.546±0.00 6.853±0.00 N/A N/A 9.690±0.00 14.658±0.00 N/A 5.165±0.00 N/A 6.910±0.00 N/A 8.041±0.92 N/A 45.509±9.33
ENST00000476672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.479±0.00 N/A N/A
ENST00000480918 N/A N/A 2.861±0.00 N/A N/A 2.999±0.00 N/A 3.614±0.00 N/A N/A N/A 4.572±0.00 N/A 64.225±0.00
ENST00000482125 N/A N/A N/A N/A N/A N/A 23.354±13.59 N/A N/A N/A 95.207±53.75 N/A N/A N/A
ENST00000491062 20.092±0.00 10.416±0.00 N/A 16.485±0.00 15.753±0.00 16.068±12.23 N/A 11.452±0.00 N/A N/A N/A 14.484±1.59 10.824±3.24 46.473±0.00
ENST00000498658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.399±0.00 50.014±0.00 305.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0001 VISTA 3:180418639-181020170
CIL_00081O CIL_00081O_0001 VISTA 3:180444037-181045086
CIL_0001FQ CIL_0001FQ_0001 CGP 3:180602130-180871005
CIL_0001FR CIL_0001FR_0001 CGP 3:180602858-180982753
CIL_0007MF CIL_0007MF_0001 UCNEbase 3:180719005-182597004
CIL_0008UV CIL_0008UV_0001 VISTA 3:180755851-181358014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002151 IEA G-quadruplex RNA binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 TAS nucleolus
GO:0005737 IDA cytoplasm
GO:0005844 IEA polysome
GO:0006915 TAS apoptotic process
GO:0007517 IEA muscle organ development
GO:0016020 IDA membrane
GO:0017148 IEA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0043034 IEA costamere
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022968 fxr1 fragile X mental retardation, autosomal homolog 1 protein_coding Danio_rerio
ENSMUSG00000027680 Fxr1 fragile X mental retardation gene 1, autosomal homolog protein_coding Mus_musculus

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