C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HERV-H LTR-associating 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114455 HHLA2 9606 + 3:108296490-108378285 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357759 HHLA2-001 108302485-108378285 protein_coding
  ENST00000462629 HHLA2-007 108296549-108353653 protein_coding
  ENST00000463019 HHLA2-008 108296544-108355130 protein_coding
  ENST00000467282 HHLA2-009 108296529-108355179 protein_coding
  ENST00000467562 HHLA2-003 108296547-108377508 protein_coding
  ENST00000467761 HHLA2-004 108310641-108378285 protein_coding
  ENST00000482099 HHLA2-005 108353656-108378285 protein_coding
  ENST00000482430 HHLA2-010 108296548-108353770 protein_coding
  ENST00000489514 HHLA2-006 108311785-108378285 protein_coding
  ENST00000491820 HHLA2-002 108296546-108377278 protein_coding
  ENST00000619531 HHLA2-201 108296490-108378280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000462629ENST00000467282ENST00000467562ENST00000467761ENST00000482099ENST00000482430ENST00000489514ENST00000491820ENST00000619531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000462629 0.425±0.00 0.714±0.00 1.197±0.00 0.242±0.00 0.425±0.00 N/A 0.290±0.00 0.189±0.00 N/A 0.305±0.00 N/A N/A 0.316±0.00
ENST00000467282 N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 0.697±0.00 N/A N/A N/A N/A
ENST00000467562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.303±0.00
ENST00000467761 0.124±0.00 0.671±0.00 0.864±0.00 0.209±0.00 0.500±0.26 1.812±0.00 N/A 0.049±0.00 N/A 0.062±0.00 0.202±0.00 0.026±0.00 0.337±0.00
ENST00000482099 N/A N/A N/A 0.082±0.00 N/A 2.748±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000482430 N/A N/A N/A N/A 0.766±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A
ENST00000491820 N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.18
ENST00000619531 N/A N/A N/A 0.154±0.00 N/A 2.166±0.00 N/A N/A N/A N/A 0.158±0.13 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001819 IDA positive regulation of cytokine production
GO:0003674 ND molecular_function
GO:0005515 IPI:IEA protein binding
GO:0005575 ND cellular_component
GO:0016021 IEA integral component of membrane
GO:0031295 IDA T cell costimulation
GO:0042104 IDA positive regulation of activated T cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004763 HHLA2 (1 of 4) HERV-H LTR-associating 2 protein_coding Danio_rerio
ENSDARG00000043182 HHLA2 (2 of 4) HERV-H LTR-associating 2 protein_coding Danio_rerio
ENSDARG00000086254 HHLA2 (3 of 4) HERV-H LTR-associating 2 protein_coding Danio_rerio
ENSDARG00000088680 HHLA2 (4 of 4) HERV-H LTR-associating 2 protein_coding Danio_rerio

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