C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 48
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114742 WDR48 9606 + 3:39051998-39096671 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302313 WDR48-001 39051998-39096388 protein_coding
  ENST00000413099 WDR48-004 39052016-39095078 nonsense_mediated_decay
  ENST00000420940 WDR48-003 39052020-39096671 nonsense_mediated_decay
  ENST00000423296 WDR48-007 39052013-39068820 nonsense_mediated_decay
  ENST00000433841 WDR48-006 39052019-39069690 nonsense_mediated_decay
  ENST00000441361 WDR48-008 39052301-39074749 protein_coding
  ENST00000463198 WDR48-011 39078161-39086384 processed_transcript
  ENST00000466405 WDR48-005 39089568-39096664 processed_transcript
  ENST00000477197 WDR48-010 39087818-39091694 processed_transcript
  ENST00000489838 WDR48-009 39078011-39084187 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302313ENST00000413099ENST00000420940
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302313 4.766±0.00 3.824±0.00 2.740±0.00 4.259±0.12 4.420±0.97 3.953±0.11 1.949±1.13 3.495±1.44 7.576±0.00 4.478±1.86 1.717±0.00 5.092±1.34 4.921±2.09 20.142±8.77
ENST00000413099 N/A N/A 3.359±0.00 N/A N/A 3.258±0.00 N/A N/A 4.802±0.00 8.088±0.00 1.281±0.00 2.606±0.00 N/A 22.989±0.00
ENST00000420940 3.206±0.00 4.946±0.00 N/A 5.870±1.83 5.371±0.00 5.657±0.00 2.080±1.35 3.736±2.69 2.275±0.00 3.476±0.00 1.928±0.86 5.462±0.82 6.382±0.66 20.986±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H1 CIL_0006H1_0001 CGP 3:38845769-39096671

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005764 IEA lysosome
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007283 IEA spermatogenesis
GO:0007338 IEA single fertilization
GO:0008584 IEA male gonad development
GO:0016032 IEA viral process
GO:0016579 IDA protein deubiquitination
GO:0035264 IEA multicellular organism growth
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043588 IEA skin development
GO:0048568 IEA embryonic organ development
GO:0048705 IEA skeletal system morphogenesis
GO:0048872 IEA homeostasis of number of cells
GO:0050679 IEA positive regulation of epithelial cell proliferation
GO:0072520 IEA seminiferous tubule development
GO:1902525 IEA regulation of protein monoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038543 wdr48 WD repeat domain 48 protein_coding Danio_rerio
ENSDARG00000044440 WDR48 (2 of 3) WD repeat domain 48 protein_coding Danio_rerio
ENSDARG00000079195 WDR48 (3 of 3) WD repeat domain 48 protein_coding Danio_rerio
ENSMUSG00000032512 Wdr48 WD repeat domain 48 protein_coding Mus_musculus

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