C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114923 SLC4A3 9606 + 2:219627327-219641980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273063 SLC4A3-001 219627565-219641980 protein_coding
  ENST00000317151 SLC4A3-002 219627661-219641980 protein_coding
  ENST00000358055 SLC4A3-009 219627327-219641971 protein_coding
  ENST00000373760 SLC4A3-010 219627394-219641971 protein_coding
  ENST00000413743 SLC4A3-008 219631130-219633009 protein_coding
  ENST00000416910 SLC4A3-011 219632059-219637795 nonsense_mediated_decay
  ENST00000425141 SLC4A3-004 219627627-219641728 nonsense_mediated_decay
  ENST00000444906 SLC4A3-005 219633346-219635781 nonsense_mediated_decay
  ENST00000497589 SLC4A3-003 219628516-219632418 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273063ENST00000317151ENST00000358055ENST00000373760ENST00000416910ENST00000425141ENST00000444906ENST00000497589
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273063 N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000317151 0.454±0.00 1.233±0.00 0.102±0.00 2.713±1.43 0.951±0.00 0.998±0.00 11.464±9.44 N/A 0.127±0.00 0.365±0.00 0.031±0.00 14.185±9.53 0.938±0.16 N/A
ENST00000358055 N/A 0.241±0.00 N/A N/A 0.492±0.00 N/A N/A 1.264±0.00 N/A N/A N/A 10.981±0.00 N/A 1.059±0.00
ENST00000373760 N/A N/A N/A 3.175±1.00 N/A N/A 9.665±5.21 N/A N/A N/A N/A N/A 0.917±0.00 4.170±0.00
ENST00000416910 N/A N/A 0.532±0.00 N/A N/A N/A N/A N/A N/A 0.641±0.00 N/A N/A 0.591±0.00 N/A
ENST00000425141 N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A 0.022±0.00 N/A N/A 0.923±0.10 0.514±0.00 N/A
ENST00000444906 N/A N/A N/A N/A N/A 0.281±0.00 N/A N/A N/A N/A N/A 1.706±0.00 N/A N/A
ENST00000497589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_00082R CIL_00082R_0001 VISTA 2:219549147-220152579
CIL_0006O3 CIL_0006O3_0001 CGP 2:219597860-219641980
CIL_0008ED CIL_0008ED_0001 VISTA 2:219606364-220208558
CIL_0006O4 CIL_0006O4_0001 CGP 2:219627327-221574202

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 TAS ion transport
GO:0006820 IEA anion transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0015301 IEA anion:anion antiporter activity
GO:0015701 TAS bicarbonate transport
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0051453 IEA regulation of intracellular pH
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053678 SLC4A3 solute carrier family 4 (anion exchanger), member 3 protein_coding Danio_rerio
ENSMUSG00000006576 Slc4a3 solute carrier family 4 (anion exchanger), member 3 protein_coding Mus_musculus

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