C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115339 GALNT3 9606 - 2:165747591-165794682 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392701 GALNT3-001 165747591-165794682 protein_coding
  ENST00000409882 GALNT3-010 165747803-165761907 protein_coding
  ENST00000412248 GALNT3-004 165757047-165794659 protein_coding
  ENST00000414977 GALNT3-002 165770529-165793879 protein_coding
  ENST00000422973 GALNT3-003 165770625-165794247 protein_coding
  ENST00000431484 GALNT3-005 165770431-165794650 protein_coding
  ENST00000437849 GALNT3-007 165757068-165764959 nonsense_mediated_decay
  ENST00000447156 GALNT3-006 165770666-165771691 protein_coding
  ENST00000463254 GALNT3-008 165758618-165762025 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392701ENST00000409882ENST00000412248ENST00000422973ENST00000437849
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392701 0.095±0.00 N/A 0.395±0.00 0.083±0.01 0.436±0.00 1.272±0.79 0.024±0.00 0.552±0.42 0.324±0.25 0.962±0.10 N/A 2.896±2.75 1.248±0.63 3.518±0.00
ENST00000409882 0.107±0.00 0.340±0.00 N/A 0.697±0.00 1.878±0.65 4.168±1.03 N/A 2.384±0.00 0.142±0.08 2.212±0.00 N/A 5.608±5.19 1.726±0.81 5.572±3.30
ENST00000412248 N/A N/A 0.486±0.00 N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A 0.546±0.00 3.115±0.00
ENST00000422973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A
ENST00000437849 N/A N/A N/A N/A 4.560±0.00 4.100±0.00 0.267±0.00 0.543±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0001 VISTA 2:165345029-165948304
CIL_0003S2 CIL_0003S2_0002 CGP 2:165469647-165794682
CIL_0006CI CIL_0006CI_0001 CGP 2:165747591-165953843

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005509 IDA calcium ion binding
GO:0005794 IDA Golgi apparatus
GO:0005975 NAS carbohydrate metabolic process
GO:0008152 IEA metabolic process
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0018242 IDA protein O-linked glycosylation via serine
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030145 IDA manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063724 GALNT3 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000026994 Galnt3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 protein_coding Mus_musculus

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