C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3b, subunit 1, 155kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115524 SF3B1 9606 - 2:197389784-197435091 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335508 SF3B1-001 197389784-197435091 protein_coding
  ENST00000409915 SF3B1-005 197416891-197435027 protein_coding
  ENST00000414174 SF3B1-003 197420181-197435016 nonsense_mediated_decay
  ENST00000414963 SF3B1-014 197418796-197435079 protein_coding
  ENST00000424674 SF3B1-012 197393052-197399028 protein_coding
  ENST00000462613 SF3B1-013 197402022-197402452 processed_transcript
  ENST00000468925 SF3B1-008 197407936-197408694 retained_intron
  ENST00000470268 SF3B1-002 197409783-197420115 retained_intron
  ENST00000479532 SF3B1-007 197392255-197393351 retained_intron
  ENST00000482158 SF3B1-010 197416594-197418962 retained_intron
  ENST00000487698 SF3B1-004 197418796-197435079 protein_coding
  ENST00000496458 SF3B1-011 197397954-197398772 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335508ENST00000424674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335508 19.263±0.00 22.567±0.00 2.805±0.00 12.777±6.99 8.815±3.98 20.877±0.64 10.521±8.04 4.470±2.11 13.910±11.93 7.136±0.00 3.534±1.61 24.520±8.65 16.282±3.38 26.929±5.46
ENST00000424674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 104.434±29.59 30.061±0.00 50.455±11.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042O CIL_00042O_0002 CGP 2:196967017-197435091
CIL_0007X7 CIL_0007X7_0001 VISTA 2:196975905-197591368
CIL_00042R CIL_00042R_0002 CGP 2:197389784-197475308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 NAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003682 IEA chromatin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 NAS spliceosomal complex
GO:0005689 IDA U12-type spliceosomal complex
GO:0008380 TAS RNA splicing
GO:0009952 IEA anterior/posterior pattern specification
GO:0010467 TAS gene expression
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056138 sf3b1 splicing factor 3b, subunit 1 protein_coding Danio_rerio
ENSMUSG00000025982 Sf3b1 splicing factor 3b, subunit 1 protein_coding Mus_musculus

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