C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DDB1 and CUL4 associated factor 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115827 DCAF17 9606 + 2:171434217-171485052 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339506 DCAF17-003 171453124-171481167 protein_coding
  ENST00000375255 DCAF17-001 171434251-171485052 protein_coding
  ENST00000431110 DCAF17-008 171472870-171481279 protein_coding
  ENST00000436317 DCAF17-004 171434664-171458069 nonsense_mediated_decay
  ENST00000468592 DCAF17-002 171434217-171482158 processed_transcript
  ENST00000480855 DCAF17-006 171443137-171450075 retained_intron
  ENST00000490217 DCAF17-005 171434702-171449958 processed_transcript
  ENST00000493106 DCAF17-007 171468977-171474384 retained_intron
  ENST00000495925 DCAF17-010 171434657-171449925 processed_transcript
  ENST00000498486 DCAF17-009 171479656-171481132 retained_intron
  ENST00000539783 DCAF17-201 171434251-171485048 protein_coding
  ENST00000611110 DCAF17-202 171453122-171481167 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375255ENST00000468592ENST00000539783
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375255 0.872±0.00 N/A N/A 0.796±0.00 0.508±0.00 N/A 2.239±0.00 0.529±0.00 N/A 1.864±0.35 0.307±0.00 2.122±0.00
ENST00000468592 N/A 1.872±0.00 2.674±0.00 N/A N/A N/A N/A N/A 0.721±0.00 N/A N/A 2.711±0.00
ENST00000539783 N/A 0.905±0.00 N/A 0.491±0.00 0.291±0.00 0.864±0.00 0.698±0.00 N/A 0.628±0.00 1.200±0.00 0.677±0.16 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S9 CIL_0004S9_0001 CGP 2:170990823-171434802
CIL_0002PA CIL_0002PA_0001 CGP 2:171317405-171485052
CIL_0003IN CIL_0003IN_0002 CGP 2:171434217-171558133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0080008 IDA Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074909 dcaf17 ddb1 and cul4 associated factor 17 protein_coding Danio_rerio
ENSMUSG00000041966 Dcaf17 DDB1 and CUL4 associated factor 17 protein_coding Mus_musculus

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