C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 25 (aspartate/glutamate carrier), member 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115840 SLC25A12 9606 - 2:171784370-171999859 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263812 SLC25A12-006 171784775-171894223 nonsense_mediated_decay
  ENST00000422440 SLC25A12-001 171784370-171894252 protein_coding
  ENST00000426896 SLC25A12-007 171834031-171894244 nonsense_mediated_decay
  ENST00000464063 SLC25A12-010 171855927-171999859 processed_transcript
  ENST00000472070 SLC25A12-002 171784832-171788942 retained_intron
  ENST00000472748 SLC25A12-009 171844369-171999855 processed_transcript
  ENST00000475360 SLC25A12-003 171837149-171893258 nonsense_mediated_decay
  ENST00000484227 SLC25A12-008 171855801-171999792 processed_transcript
  ENST00000485880 SLC25A12-004 171815109-171834335 retained_intron
  ENST00000494892 SLC25A12-005 171809425-171810280 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263812ENST00000422440ENST00000426896
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263812 0.602±0.00 N/A N/A N/A 1.521±0.00 2.662±0.00 20.344±0.00 4.305±0.00 N/A 1.041±0.00 11.825±1.87 2.739±1.05 1.579±0.58 1.693±0.54
ENST00000422440 2.903±0.00 5.274±0.00 2.606±0.00 15.159±2.12 3.850±0.16 5.826±0.00 15.622±3.39 6.418±0.00 1.489±0.97 1.007±0.36 9.564±2.04 3.906±1.30 1.545±0.77 3.713±0.00
ENST00000426896 N/A N/A N/A N/A N/A N/A N/A 0.480±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RB CIL_0007RB_0001 VISTA 2:171663732-172264836
CIL_0008A7 CIL_0008A7_0001 VISTA 2:171663843-172264792
CIL_0007RB CIL_0007RB_0002 VISTA 2:171664837-172267307
CIL_00062P CIL_00062P_0002 CGP 2:171687409-171999859
CIL_0007JJ CIL_0007JJ_0001 UCNEbase 2:171723627-171935515
CIL_0008C9 CIL_0008C9_0001 VISTA 2:171771791-172373521
CIL_0009AY CIL_0009AY_0001 VISTA 2:171783051-172384518
CIL_0004K0 CIL_0004K0_0001 CGP 2:171784370-171999859

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005509 IDA:IEA calcium ion binding
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006006 TAS glucose metabolic process
GO:0006094 TAS gluconeogenesis
GO:0015183 IDA L-aspartate transmembrane transporter activity
GO:0015810 IDA aspartate transport
GO:0015813 IDA L-glutamate transport
GO:0016021 NAS integral component of membrane
GO:0043490 IDA malate-aspartate shuttle
GO:0044281 TAS small molecule metabolic process
GO:0051592 IDA response to calcium ion
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029218 slc25a12 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 protein_coding Danio_rerio
ENSMUSG00000027010 Slc25a12 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 protein_coding Mus_musculus

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