C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho family GTPase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115963 RND3 9606 - 2:150468195-150539011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263895 RND3-001 150468195-150487694 protein_coding
  ENST00000375734 RND3-002 150468195-150487667 protein_coding
  ENST00000409557 RND3-007 150468209-150485382 protein_coding
  ENST00000439275 RND3-003 150474875-150539011 protein_coding
  ENST00000454202 RND3-004 150474875-150487729 protein_coding
  ENST00000466334 RND3-008 150470219-150475104 retained_intron
  ENST00000472416 RND3-005 150471638-150487100 processed_transcript
  ENST00000473639 RND3-009 150470141-150471960 retained_intron
  ENST00000497865 RND3-006 150469777-150486866 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263895ENST00000375734ENST00000409557ENST00000473639ENST00000497865
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263895 25.508±0.00 9.005±0.00 1.894±0.00 10.784±7.97 8.268±0.00 8.260±0.00 3.824±0.77 4.540±1.76 9.327±7.25 1.378±0.06 5.145±2.78 8.117±3.98 2.718±0.00
ENST00000375734 N/A N/A 1.781±0.00 5.955±0.00 4.431±0.00 2.253±0.00 7.037±0.00 4.209±0.00 1.787±0.00 0.841±0.27 8.152±3.08 5.527±4.00 1.021±0.00
ENST00000409557 N/A 2.512±0.00 N/A N/A N/A N/A N/A 4.165±0.00 N/A N/A 7.258±2.97 6.567±5.59 1.388±0.00
ENST00000473639 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.587±0.00 N/A N/A N/A
ENST00000497865 N/A N/A 3.662±0.00 N/A 5.105±0.00 3.309±0.00 N/A 6.161±0.00 N/A N/A 19.330±10.39 25.183±0.00 4.265±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DZ CIL_0007DZ_0001 CGP 2:149569634-150539011
CIL_0008JE CIL_0008JE_0001 VISTA 2:150026360-150628958

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005794 IEA Golgi apparatus
GO:0005925 IDA focal adhesion
GO:0006184 TAS:IEA GTP catabolic process
GO:0007155 TAS cell adhesion
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030036 TAS actin cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007396 rnd3b Rho family GTPase 3b protein_coding Danio_rerio
ENSDARG00000076799 rnd3a Rho family GTPase 3a protein_coding Danio_rerio
ENSMUSG00000017144 Rnd3 Rho family GTPase 3 protein_coding Mus_musculus

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