C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 3A (BRIGHT-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116017 ARID3A 9606 + 19:925781-975934 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263620 ARID3A-001 926037-975934 protein_coding
  ENST00000457152 ARID3A-003 932565-964366 nonsense_mediated_decay
  ENST00000585733 ARID3A-007 964289-965270 retained_intron
  ENST00000585895 ARID3A-002 925781-929498 processed_transcript
  ENST00000587532 ARID3A-005 932509-972055 protein_coding
  ENST00000590749 ARID3A-006 966787-968795 retained_intron
  ENST00000592216 ARID3A-004 928678-929357 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263620ENST00000585733ENST00000587532
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263620 1.874±0.00 0.772±0.00 0.103±0.00 0.147±0.02 1.149±0.30 0.715±0.35 0.225±0.00 0.596±0.55 0.446±0.00 0.748±0.39 0.562±0.00 4.939±5.22 14.213±4.21 2.236±0.62
ENST00000585733 N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587532 N/A N/A N/A 0.213±0.00 N/A N/A 0.548±0.00 N/A N/A N/A N/A N/A N/A 11.587±3.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000I3 CIL_0000I3_0001 CGP 19:917287-975934
CIL_0004VT CIL_0004VT_0001 CGP 19:925781-998438

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0042803 IEA protein homodimerization activity
GO:0045121 IDA membrane raft
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070843 ARID3A AT rich interactive domain 3A (BRIGHT-like) protein_coding Danio_rerio
ENSMUSG00000019564 Arid3a AT rich interactive domain 3A (BRIGHT-like) protein_coding Mus_musculus

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