C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 62
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116525 TRIM62 9606 - 1:33145402-33182059 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291416 TRIM62-001 33145402-33181666 protein_coding
  ENST00000485148 TRIM62-004 33159692-33182053 processed_transcript
  ENST00000486583 TRIM62-005 33181255-33182059 processed_transcript
  ENST00000543586 TRIM62-006 33146702-33176550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000291416ENST00000543586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000291416 1.496±0.00 2.148±0.00 N/A 4.020±0.00 0.790±0.00 0.554±0.00 0.737±0.00 1.525±0.00 0.709±0.58 4.663±0.00 1.342±0.61 2.342±1.38 1.496±0.35
ENST00000543586 N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0032897 IDA negative regulation of viral transcription
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IMP innate immune response
GO:0046596 IDA regulation of viral entry into host cell
GO:0046872 IEA metal ion binding
GO:0051091 IMP positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:1902186 IMP regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060901 trim62 tripartite motif containing 62 protein_coding Danio_rerio
ENSDARG00000095536 TRIM62 (2 of 2) tripartite motif containing 62 protein_coding Danio_rerio
ENSMUSG00000041000 Trim62 tripartite motif-containing 62 protein_coding Mus_musculus

Loading