C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myocyte enhancer factor 2D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116604 MEF2D 9606 - 1:156463727-156500828 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348159 MEF2D-001 156463727-156500828 protein_coding
  ENST00000360595 MEF2D-004 156466210-156490599 protein_coding
  ENST00000368240 MEF2D-201 156466218-156500753 protein_coding
  ENST00000464356 MEF2D-005 156463727-156483430 protein_coding
  ENST00000475587 MEF2D-002 156467628-156500753 nonsense_mediated_decay
  ENST00000489057 MEF2D-006 156483261-156500779 protein_coding
  ENST00000493077 MEF2D-007 156476929-156479780 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348159ENST00000360595ENST00000368240ENST00000464356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348159 N/A N/A 0.391±0.00 5.476±4.86 5.864±0.00 0.397±0.00 5.411±0.00 N/A 1.062±0.66 12.526±0.00 N/A 10.218±0.00 2.846±0.00 5.239±2.54
ENST00000360595 9.421±0.00 7.138±0.00 0.557±0.00 4.968±3.22 N/A 6.834±0.00 5.818±5.34 2.309±1.93 2.279±0.12 21.483±0.00 65.882±0.00 8.773±0.87 8.922±3.08 7.032±3.92
ENST00000368240 N/A N/A 0.998±0.00 N/A N/A 2.052±0.00 1.522±0.00 1.880±0.00 N/A 1.549±0.00 N/A 5.223±2.58 3.919±0.00 5.193±0.00
ENST00000464356 N/A N/A N/A N/A 1.784±0.00 N/A N/A N/A N/A N/A N/A 1.260±0.00 N/A 1.429±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001649 IEA osteoblast differentiation
GO:0001958 IEA endochondral ossification
GO:0002062 IEA chondrocyte differentiation
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0007399 IEA nervous system development
GO:0007512 IEP adult heart development
GO:0007517 TAS muscle organ development
GO:0033613 IPI activating transcription factor binding
GO:0035914 IEA skeletal muscle cell differentiation
GO:0042826 IPI histone deacetylase binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040237 mef2d myocyte enhancer factor 2d protein_coding Danio_rerio
ENSMUSG00000001419 Mef2d myocyte enhancer factor 2D protein_coding Mus_musculus

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