C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulocalbin 2, EF-hand calcium binding domain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117906 RCN2 9606 + 15:76931619-76954392 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320963 RCN2-002 76931738-76949860 protein_coding
  ENST00000394883 RCN2-003 76931755-76949850 protein_coding
  ENST00000394885 RCN2-001 76931619-76954392 protein_coding
  ENST00000557805 RCN2-006 76931871-76947489 nonsense_mediated_decay
  ENST00000558598 RCN2-004 76941401-76948885 retained_intron
  ENST00000560833 RCN2-005 76943492-76948615 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320963ENST00000394883ENST00000394885ENST00000557805ENST00000558598ENST00000560833
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320963 5.325±0.00 3.946±0.00 0.944±0.00 19.898±0.00 5.202±2.08 4.446±3.42 2.969±2.49 9.071±7.93 2.605±1.00 3.187±1.32 1.367±1.19 12.609±11.38 14.369±6.95 40.876±18.29
ENST00000394883 2.859±0.00 8.391±0.00 N/A 16.746±6.88 7.989±5.75 3.051±0.79 3.961±3.34 12.595±0.00 2.627±0.48 10.635±0.00 3.311±2.40 13.552±7.59 9.238±2.08 26.115±0.00
ENST00000394885 0.347±0.00 0.589±0.00 N/A N/A N/A 0.389±0.00 N/A N/A 0.206±0.00 0.280±0.00 N/A 4.773±0.00 4.862±0.00 9.049±0.00
ENST00000557805 N/A N/A 1.102±0.00 N/A N/A N/A N/A N/A N/A N/A 0.364±0.00 84.648±0.00 89.846±0.00 213.089±0.00
ENST00000558598 N/A 1.100±0.00 0.682±0.00 N/A 0.699±0.00 0.725±0.00 0.154±0.00 N/A 0.277±0.00 0.616±0.00 N/A 0.725±0.00 N/A N/A
ENST00000560833 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.272±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000246 CIL_000246_0001 CGP 15:76931619-77037332

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005783 IDA endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039378 rcn2 reticulocalbin 2 protein_coding Danio_rerio
ENSMUSG00000032320 Rcn2 reticulocalbin 2 protein_coding Mus_musculus

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