C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stromal antigen 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118007 STAG1 9606 - 3:136336233-136752403 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000236698 STAG1-002 136336236-136752378 protein_coding
  ENST00000383202 STAG1-001 136336233-136752368 protein_coding
  ENST00000434713 STAG1-201 136337157-136752403 protein_coding
  ENST00000462818 STAG1-008 136499766-136604473 retained_intron
  ENST00000465961 STAG1-007 136348789-136359189 retained_intron
  ENST00000480733 STAG1-005 136518043-136752366 protein_coding
  ENST00000483235 STAG1-003 136337388-136752378 nonsense_mediated_decay
  ENST00000487065 STAG1-004 136417558-136752377 nonsense_mediated_decay
  ENST00000492318 STAG1-006 136422957-136473603 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383202ENST00000434713ENST00000480733ENST00000487065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383202 6.657±0.00 5.138±0.00 2.108±0.00 3.191±0.16 6.212±1.17 6.551±2.60 2.965±1.60 3.909±2.29 2.958±0.86 4.444±0.61 4.443±3.76 6.991±3.32 4.289±0.64 5.667±1.49
ENST00000434713 N/A N/A 1.976±0.00 N/A 3.624±0.00 4.222±0.00 1.389±0.00 2.217±0.00 1.767±0.00 6.592±0.00 N/A 1.087±0.00 3.501±0.00 3.918±0.00
ENST00000480733 N/A N/A 9.385±0.00 N/A N/A 8.257±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487065 N/A N/A N/A N/A N/A N/A N/A N/A 4.935±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0003682 IEA chromatin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005829 TAS cytosol
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0030054 IDA cell junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061205 stag1a stromal antigen 1a protein_coding Danio_rerio
ENSDARG00000062137 stag1b stromal antigen 1b protein_coding Danio_rerio
ENSMUSG00000037286 Stag1 stromal antigen 1 protein_coding Mus_musculus

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