C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 46
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118096 IFT46 9606 - 11:118544528-118572970 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264020 IFT46-013 118544543-118566035 protein_coding
  ENST00000264021 IFT46-001 118544528-118566076 protein_coding
  ENST00000525060 IFT46-011 118545825-118555627 retained_intron
  ENST00000527868 IFT46-003 118560065-118565928 processed_transcript
  ENST00000528378 IFT46-008 118555021-118572970 protein_coding
  ENST00000530185 IFT46-005 118556994-118566011 retained_intron
  ENST00000530872 IFT46-002 118544592-118565917 protein_coding
  ENST00000531201 IFT46-010 118544901-118557656 retained_intron
  ENST00000531939 IFT46-009 118552230-118560422 protein_coding
  ENST00000533918 IFT46-004 118556906-118572703 protein_coding
  ENST00000534114 IFT46-007 118555020-118572760 protein_coding
  ENST00000534156 IFT46-006 118552235-118565646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264020ENST00000264021ENST00000525060ENST00000530185ENST00000530872ENST00000531201ENST00000533918ENST00000534114ENST00000534156
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264020 1.806±0.00 N/A 0.858±0.00 1.925±0.17 1.885±0.00 6.322±0.00 3.224±0.00 1.323±0.69 1.856±0.00 N/A 0.655±0.00 3.057±2.13 0.732±0.35 6.179±0.58
ENST00000264021 2.402±0.00 2.727±0.00 N/A 4.070±0.69 1.611±0.00 N/A 1.795±1.04 3.185±2.01 N/A 4.920±0.00 2.736±0.00 6.576±6.30 1.130±0.65 10.372±0.00
ENST00000525060 N/A N/A 2.406±0.00 5.854±0.00 1.496±0.00 3.601±0.00 1.263±0.00 N/A 2.079±0.00 N/A N/A N/A N/A N/A
ENST00000530185 N/A N/A N/A N/A N/A 2.717±0.00 N/A N/A N/A N/A N/A N/A 1.774±0.00 N/A
ENST00000530872 1.613±0.00 1.624±0.00 N/A 2.298±0.00 2.981±0.00 N/A N/A 1.680±0.00 0.728±0.00 N/A 0.780±0.00 N/A N/A N/A
ENST00000531201 N/A N/A N/A N/A N/A N/A N/A 1.318±0.00 N/A 1.380±0.00 N/A N/A N/A N/A
ENST00000533918 N/A N/A 3.118±0.00 5.062±0.00 N/A 2.329±0.00 3.056±0.00 4.352±0.00 5.064±0.00 4.861±0.00 3.269±0.00 2.715±0.00 N/A N/A
ENST00000534114 N/A N/A N/A N/A N/A N/A N/A 1.112±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.867±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0001 VISTA 11:118137591-118740525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IBA centrosome
GO:0005929 IBA cilium
GO:0007224 IEA smoothened signaling pathway
GO:0008022 ISS protein C-terminus binding
GO:0008150 ND biological_process
GO:0030992 IBA intraciliary transport particle B
GO:0031512 IEA motile primary cilium
GO:0031514 ISS motile cilium
GO:0036064 ISS ciliary basal body
GO:0042073 IEA:ISS intraciliary transport
GO:0042384 ISS cilium assembly
GO:0050821 ISS protein stabilization
GO:0072372 IEA primary cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011240 ift46 intraflagellar transport protein 46 protein_coding Danio_rerio
ENSMUSG00000002031 Ift46 intraflagellar transport 46 protein_coding Mus_musculus

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