C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118946 PCDH17 9606 + 13:57631810-57729311 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377918 PCDH17-001 57631812-57729311 protein_coding
  ENST00000484979 PCDH17-002 57631810-57725540 nonsense_mediated_decay
  ENST00000612954 PCDH17-004 57634383-57725293 protein_coding
  ENST00000615375 PCDH17-005 57635013-57724748 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377918ENST00000484979ENST00000612954ENST00000615375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377918 0.735±0.00 1.050±0.00 0.483±0.00 3.566±1.81 0.330±0.25 0.888±0.82 0.333±0.28 0.106±0.00 0.212±0.03 14.342±13.50 0.037±0.03 0.469±0.18 0.885±0.37 3.239±0.00
ENST00000484979 N/A N/A N/A N/A N/A 0.034±0.00 N/A 0.188±0.00 N/A N/A 0.116±0.01 N/A N/A 7.873±0.00
ENST00000612954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 0.489±0.00 2.822±0.00 N/A
ENST00000615375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MF CIL_0000MF_0001 CGP 13:57631810-60163987

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027041 pcdh17 protocadherin 17 protein_coding Danio_rerio
ENSMUSG00000035566 Pcdh17 protocadherin 17 protein_coding Mus_musculus

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