C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 2 open reading frame 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119147 C2orf40 9606 + 2:106063246-106078159 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000238044 C2orf40-001 106065656-106078159 protein_coding
  ENST00000409944 C2orf40-002 106063294-106078155 protein_coding
  ENST00000437659 C2orf40-005 106065800-106077900 protein_coding
  ENST00000479337 C2orf40-003 106073818-106078155 retained_intron
  ENST00000489174 C2orf40-006 106063257-106074239 processed_transcript
  ENST00000493478 C2orf40-004 106063246-106072401 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000238044ENST00000409944ENST00000437659ENST00000479337ENST00000489174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000238044 8.448±0.00 6.997±0.00 1.426±0.00 4.989±3.88 13.500±0.00 8.740±8.34 1.858±1.46 20.368±0.00 2.961±2.85 18.101±16.98 5.114±0.00 6.642±5.06 11.551±1.84 18.918±0.00
ENST00000409944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.600±3.39
ENST00000437659 N/A N/A N/A N/A N/A N/A 0.339±0.00 N/A N/A N/A N/A N/A 6.432±0.00 N/A
ENST00000479337 N/A 2.173±0.00 N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A 1.866±1.77 N/A N/A
ENST00000489174 N/A N/A N/A N/A N/A N/A N/A 1.139±0.00 N/A N/A N/A N/A N/A 7.350±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Y7 CIL_0003Y7_0001 CGP 2:105744897-106078159
CIL_0003Y8 CIL_0003Y8_0001 CGP 2:106063246-106194339

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0008054 IEA cyclin catabolic process
GO:0031410 IEA cytoplasmic vesicle
GO:0070314 IEA G1 to G0 transition
GO:0090398 IEA cellular senescence

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056087 C9H2orf40 (1 of 2) chromosome 2 open reading frame 40 protein_coding Danio_rerio
ENSDARG00000088717 C6H2orf40 (2 of 2) chromosome 2 open reading frame 40 protein_coding Danio_rerio
ENSMUSG00000026051 1500015O10Rik RIKEN cDNA 1500015O10 gene protein_coding Mus_musculus

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