C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NRDE-2, necessary for RNA interference, domain containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119720 NRDE2 9606 - 14:90267856-90332137 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354366 NRDE2-001 90267856-90332137 protein_coding
  ENST00000553409 NRDE2-002 90278060-90331910 nonsense_mediated_decay
  ENST00000554464 NRDE2-007 90290575-90302837 protein_coding
  ENST00000555903 NRDE2-004 90278558-90288885 retained_intron
  ENST00000556189 NRDE2-003 90278054-90312516 nonsense_mediated_decay
  ENST00000557064 NRDE2-006 90303954-90304654 processed_transcript
  ENST00000557106 NRDE2-005 90316587-90331969 processed_transcript
  ENST00000557732 NRDE2-008 90278061-90279283 retained_intron
  ENST00000612614 NRDE2-009 90278058-90281595 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354366ENST00000553409
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354366 1.151±0.00 2.531±0.00 0.625±0.00 1.210±0.79 1.332±0.22 1.224±0.44 0.743±0.47 1.074±0.61 0.953±0.20 0.774±0.04 0.319±0.00 0.959±0.43 1.553±0.22 2.229±0.00
ENST00000553409 N/A N/A N/A N/A N/A N/A 0.533±0.00 N/A 2.136±0.00 1.661±0.00 N/A 1.988±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002L5 CIL_0002L5_0002 CGP 14:90061765-90275429
CIL_0001JW CIL_0001JW_0001 CGP 14:90256495-90332137
CIL_0001U8 CIL_0001U8_0001 CGP 14:90267856-90408261

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074726 nrde2 NRDE-2, necessary for RNA interference, domain containing protein_coding Danio_rerio
ENSMUSG00000021179 Nrde2 nrde-2 necessary for RNA interference, domain containing protein_coding Mus_musculus

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