C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: epithelial cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119888 EPCAM 9606 + 2:47345158-47387601 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263735 EPCAM-001 47369148-47387034 protein_coding
  ENST00000405271 EPCAM-002 47345158-47386900 protein_coding
  ENST00000419334 EPCAM-006 47369495-47373993 protein_coding
  ENST00000456133 EPCAM-003 47345163-47387601 nonsense_mediated_decay
  ENST00000474691 EPCAM-004 47369475-47375254 retained_intron
  ENST00000490733 EPCAM-005 47373775-47385210 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263735ENST00000405271ENST00000456133ENST00000474691ENST00000490733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263735 N/A 0.278±0.00 10.865±0.00 1.370±0.29 18.974±10.22 62.520±1.46 N/A 47.989±47.44 0.614±0.23 15.744±8.07 N/A 42.486±21.62 1.363±0.44 10.939±4.92
ENST00000405271 0.457±0.00 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A 172.361±0.00 N/A 12.719±0.00
ENST00000456133 0.176±0.00 N/A N/A 0.192±0.00 2.343±0.00 30.322±0.00 0.039±0.00 35.491±0.00 N/A 6.549±5.30 0.037±0.00 193.984±0.00 1.478±1.16 10.947±0.90
ENST00000474691 N/A N/A N/A N/A N/A N/A N/A 1.971±0.00 N/A N/A N/A N/A N/A N/A
ENST00000490733 N/A 0.111±0.00 6.105±0.00 N/A 30.736±0.00 34.207±0.00 0.118±0.00 N/A N/A N/A 0.047±0.00 107.148±91.57 1.530±0.71 12.319±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0001 VISTA 2:46768636-47372293
CIL_0006KU CIL_0006KU_0001 CGP 2:47345158-47562311

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005923 IDA tight junction
GO:0008284 IDA positive regulation of cell proliferation
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016324 IDA apical plasma membrane
GO:0016328 IDA lateral plasma membrane
GO:0023019 IMP signal transduction involved in regulation of gene expression
GO:0032403 IDA protein complex binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048863 IMP stem cell differentiation
GO:0070062 IDA extracellular vesicular exosome
GO:2000048 IDA negative regulation of cell-cell adhesion mediated by cadherin
GO:2000648 IMP positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040534 epcam epithelial cell adhesion molecule protein_coding Danio_rerio
ENSMUSG00000045394 Epcam epithelial cell adhesion molecule protein_coding Mus_musculus

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