C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120093 HOXB3 9606 - 17:48548870-48604912 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311626 HOXB3-007 48549885-48574487 protein_coding
  ENST00000460160 HOXB3-006 48550267-48590238 protein_coding
  ENST00000464266 HOXB3-010 48573928-48575550 retained_intron
  ENST00000465120 HOXB3-009 48554285-48579357 protein_coding
  ENST00000470495 HOXB3-001 48548870-48553922 protein_coding
  ENST00000471459 HOXB3-012 48551141-48556521 protein_coding
  ENST00000472863 HOXB3-003 48549812-48590241 protein_coding
  ENST00000476342 HOXB3-004 48550334-48590235 protein_coding
  ENST00000478644 HOXB3-011 48555391-48556943 retained_intron
  ENST00000489475 HOXB3-005 48550268-48582622 protein_coding
  ENST00000490677 HOXB3-008 48550257-48574023 protein_coding
  ENST00000498678 HOXB3-002 48550006-48590272 protein_coding
  ENST00000552000 HOXB3-013 48573982-48604912 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000470495ENST00000472863ENST00000478644
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000470495 1.183±0.00 2.059±0.00 0.008±0.00 2.542±0.94 4.243±0.00 0.285±0.00 7.747±0.00 0.346±0.16 1.291±0.77 2.252±0.00 0.643±0.16
ENST00000472863 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.122±0.00 N/A
ENST00000478644 N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525 IEP angiogenesis
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0021546 IEA rhombomere development
GO:0021615 IEA glossopharyngeal nerve morphogenesis
GO:0030878 IEA thyroid gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0050767 IEA regulation of neurogenesis
GO:0051216 IEA cartilage development
GO:0060216 IEA definitive hemopoiesis
GO:0060324 IEA face development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029263 hoxb3a homeo box B3a protein_coding Danio_rerio
ENSMUSG00000048763 Hoxb3 homeobox B3 protein_coding Mus_musculus

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