C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120656 TAF12 9606 - 1:28589323-28643085 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263974 TAF12-001 28603101-28643005 protein_coding
  ENST00000373824 TAF12-002 28602850-28643066 protein_coding
  ENST00000471683 TAF12-003 28589323-28618030 processed_transcript
  ENST00000495422 TAF12-004 28613247-28643085 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263974ENST00000373824ENST00000471683ENST00000495422
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263974 6.194±0.00 4.885±0.00 N/A 1.421±1.10 7.974±0.00 8.862±0.00 6.393±0.00 8.892±0.00 4.933±0.00 5.573±0.00 10.218±0.00 7.640±2.60 6.937±1.09 14.734±0.00
ENST00000373824 5.855±0.00 2.714±0.00 1.746±0.00 2.498±0.22 2.545±0.16 1.974±0.38 0.778±0.00 3.019±0.00 1.642±0.55 2.178±1.21 N/A 5.394±2.41 8.631±6.57 7.842±2.58
ENST00000471683 N/A N/A N/A N/A N/A N/A N/A 3.881±0.00 N/A N/A N/A N/A N/A N/A
ENST00000495422 N/A N/A N/A 1.621±0.00 N/A 4.268±0.00 2.903±0.85 N/A N/A 2.364±0.00 N/A N/A 17.504±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892
CIL_0001X2 CIL_0001X2_0001 CGP 1:28589323-28643085

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000125 IDA PCAF complex
GO:0003677 IDA:IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA:IEA transcription factor TFIID complex
GO:0006325 TAS chromatin organization
GO:0006352 IDA:IEA DNA-templated transcription, initiation
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008134 IDA transcription factor binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0043565 IEA sequence-specific DNA binding
GO:0043966 IDA histone H3 acetylation
GO:0046982 IEA protein heterodimerization activity
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054085 taf12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSMUSG00000028899 Taf12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus

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