C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMAD family member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120693 SMAD9 9606 - 13:36844831-36920765 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350148 SMAD9-001 36844831-36920238 protein_coding
  ENST00000379826 SMAD9-201 36844831-36920272 protein_coding
  ENST00000399275 SMAD9-002 36844831-36879829 protein_coding
  ENST00000483941 SMAD9-003 36879462-36920765 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350148ENST00000379826ENST00000399275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350148 1.010±0.00 N/A 0.401±0.00 2.301±1.61 1.066±0.00 2.647±1.07 0.714±0.00 0.981±0.00 1.040±0.82 1.423±0.25 0.305±0.00 1.218±1.03 0.264±0.00 2.165±0.00
ENST00000379826 1.231±0.00 0.855±0.00 N/A N/A N/A N/A N/A N/A 1.420±0.00 0.279±0.00 N/A 0.298±0.04 0.847±0.18 N/A
ENST00000399275 0.472±0.00 1.346±0.00 N/A 2.469±1.41 1.588±1.30 N/A 0.327±0.05 1.283±0.00 N/A 1.015±0.00 0.536±0.12 1.719±1.06 0.257±0.00 3.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CB CIL_0004CB_0002 CGP 13:36819224-36920765
CIL_0000PF CIL_0000PF_0002 CGP 13:36844831-37000261

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0001666 IEA response to hypoxia
GO:0001880 IEA Mullerian duct regression
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 TAS:IEA intracellular
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0030509 TAS BMP signaling pathway
GO:0030618 TAS transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0030901 IEA midbrain development
GO:0030902 IEA hindbrain development
GO:0035556 TAS intracellular signal transduction
GO:0045597 IEA positive regulation of cell differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051216 IEA cartilage development
GO:0060348 IEA bone development
GO:0071407 IEA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021938 smad9 MAD homolog 9 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000027796 Smad9 SMAD family member 9 protein_coding Mus_musculus

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