C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 53, member C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120709 FAM53C 9606 + 5:138331935-138349729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000239906 FAM53C-001 138338032-138349729 protein_coding
  ENST00000434981 FAM53C-002 138337511-138346972 protein_coding
  ENST00000505136 FAM53C-010 138341181-138345308 processed_transcript
  ENST00000505768 FAM53C-005 138338015-138345245 processed_transcript
  ENST00000506710 FAM53C-009 138333677-138337090 processed_transcript
  ENST00000507506 FAM53C-007 138337554-138345455 processed_transcript
  ENST00000511024 FAM53C-012 138338266-138343023 retained_intron
  ENST00000511276 FAM53C-008 138338267-138345215 protein_coding
  ENST00000511595 FAM53C-003 138332105-138337146 processed_transcript
  ENST00000512180 FAM53C-006 138331935-138345058 processed_transcript
  ENST00000513056 FAM53C-004 138338266-138347080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000239906ENST00000434981ENST00000511024ENST00000513056
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000239906 3.059±0.00 2.847±0.00 1.718±0.00 8.149±0.00 2.504±0.00 6.995±0.00 2.828±1.80 N/A 3.760±0.00 3.675±0.00 5.625±0.54 5.400±3.71 4.709±2.46 5.553±0.00
ENST00000434981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.744±0.00
ENST00000511024 N/A N/A 0.739±0.00 N/A 1.267±0.00 N/A N/A 0.641±0.00 N/A 1.524±0.00 N/A N/A N/A N/A
ENST00000513056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.295±0.00 32.570±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D8 CIL_0005D8_0001 CGP 5:138252379-138338355
CIL_0005D7 CIL_0005D7_0001 CGP 5:138331935-138437028

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045127 FAM53C family with sequence similarity 53, member C protein_coding Danio_rerio
ENSMUSG00000034300 Fam53c family with sequence similarity 53, member C protein_coding Mus_musculus

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