C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear transcription factor Y, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120837 NFYB 9606 - 12:104117077-104138289 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000240055 NFYB-001 104117077-104138289 protein_coding
  ENST00000550189 NFYB-005 104121254-104128612 retained_intron
  ENST00000550881 NFYB-002 104131132-104138241 retained_intron
  ENST00000551446 NFYB-004 104123264-104138203 protein_coding
  ENST00000551727 NFYB-003 104119355-104138017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240055ENST00000550189ENST00000551446ENST00000551727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240055 2.593±0.00 N/A 0.427±0.00 4.729±0.00 1.693±0.93 4.074±2.69 1.075±0.25 3.662±0.00 1.286±0.32 0.876±0.23 1.960±0.00 3.138±0.85 1.738±0.31 4.451±1.83
ENST00000550189 N/A N/A 2.604±0.00 N/A N/A N/A N/A 3.264±0.00 N/A N/A 6.203±0.00 5.979±0.00 N/A N/A
ENST00000551446 N/A N/A N/A N/A N/A 3.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551727 6.385±0.00 7.784±0.00 2.282±0.00 8.765±1.84 5.954±1.60 10.159±7.60 6.565±4.31 6.327±3.72 4.537±1.21 7.143±1.85 5.827±0.00 14.836±11.42 12.190±10.17 29.488±11.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SA CIL_0002SA_0001 CGP 12:104064457-104138289
CIL_0004AC CIL_0004AC_0001 CGP 12:104117077-104350305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0016602 IDA CCAAT-binding factor complex
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0070491 IPI repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039185 nfyba nuclear transcription factor Y, beta a protein_coding Danio_rerio
ENSDARG00000045611 nfybb nuclear transcription factor Y, beta b protein_coding Danio_rerio
ENSMUSG00000020248 Nfyb nuclear transcription factor-Y beta protein_coding Mus_musculus

Loading