C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peroxisomal biogenesis factor 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121680 PEX16 9606 - 11:45909669-45918812 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000241041 PEX16-002 45909669-45917829 protein_coding
  ENST00000378750 PEX16-001 45910174-45918055 protein_coding
  ENST00000523721 PEX16-010 45910170-45912015 processed_transcript
  ENST00000525192 PEX16-006 45914131-45918021 protein_coding
  ENST00000525229 PEX16-008 45915469-45917828 nonsense_mediated_decay
  ENST00000527371 PEX16-009 45914264-45915543 retained_intron
  ENST00000528674 PEX16-004 45915496-45918080 nonsense_mediated_decay
  ENST00000529030 PEX16-005 45915703-45918078 nonsense_mediated_decay
  ENST00000532554 PEX16-011 45914123-45917867 processed_transcript
  ENST00000532681 PEX16-003 45910205-45918812 protein_coding
  ENST00000533151 PEX16-007 45913845-45917825 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000241041ENST00000378750ENST00000525192ENST00000525229ENST00000527371ENST00000528674ENST00000529030ENST00000532681ENST00000533151
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000241041 N/A 6.456±0.00 N/A N/A 2.771±0.00 N/A 0.226±0.00 N/A N/A 1.000±0.00 1.221±0.00 2.080±0.38 4.042±0.43 4.731±0.72
ENST00000378750 13.548±0.00 11.574±0.00 0.324±0.00 9.500±6.31 4.110±3.16 3.220±2.42 2.854±0.00 4.792±4.07 11.911±0.00 3.835±3.47 1.370±0.00 8.085±6.94 10.921±6.37 6.060±0.61
ENST00000525192 6.714±0.00 N/A N/A 7.175±0.00 6.010±0.00 3.230±0.00 N/A 6.944±0.00 N/A N/A 2.407±0.00 2.126±0.00 N/A 4.348±0.00
ENST00000525229 N/A N/A N/A N/A 1.694±0.00 N/A N/A 2.385±0.00 0.516±0.00 3.941±0.00 3.475±0.00 2.280±0.00 N/A N/A
ENST00000527371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.496±0.00 N/A 13.133±0.00
ENST00000528674 N/A N/A 0.476±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529030 N/A N/A N/A N/A N/A 2.917±0.00 0.169±0.00 N/A N/A N/A N/A 0.397±0.00 N/A N/A
ENST00000532681 N/A N/A 0.232±0.00 1.261±0.00 0.397±0.00 0.757±0.00 N/A 1.117±0.00 N/A N/A 0.927±0.00 N/A N/A N/A
ENST00000533151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.054±0.00 N/A 6.500±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V1 CIL_0002V1_0002 CGP 11:45909669-45929096

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005777 IDA peroxisome
GO:0005778 IDA peroxisomal membrane
GO:0005779 IDA integral component of peroxisomal membrane
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006625 IMP protein targeting to peroxisome
GO:0007031 IMP peroxisome organization
GO:0008022 IPI protein C-terminus binding
GO:0016020 IDA membrane
GO:0016557 IMP peroxisome membrane biogenesis
GO:0016558 IMP protein import into peroxisome matrix
GO:0022615 IDA protein to membrane docking
GO:0032581 IDA ER-dependent peroxisome organization
GO:0045046 IMP protein import into peroxisome membrane
GO:0070972 IDA protein localization to endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058202 pex16 peroxisomal biogenesis factor 16 protein_coding Danio_rerio
ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 protein_coding Mus_musculus

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