C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 39B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121775 TMEM39B 9606 + 1:32072031-32102866 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336294 TMEM39B-001 32072902-32102861 protein_coding
  ENST00000438825 TMEM39B-009 32072935-32091745 protein_coding
  ENST00000441402 TMEM39B-003 32072943-32102866 nonsense_mediated_decay
  ENST00000466321 TMEM39B-005 32072985-32091744 processed_transcript
  ENST00000468135 TMEM39B-004 32072969-32102866 processed_transcript
  ENST00000472503 TMEM39B-006 32072959-32092009 processed_transcript
  ENST00000476968 TMEM39B-008 32073166-32102866 processed_transcript
  ENST00000487305 TMEM39B-002 32072031-32102863 processed_transcript
  ENST00000498613 TMEM39B-007 32076131-32094937 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336294ENST00000438825ENST00000441402ENST00000468135ENST00000472503ENST00000476968ENST00000487305ENST00000498613
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336294 N/A 2.096±0.00 N/A N/A N/A 2.673±0.00 1.501±0.00 0.980±0.00 3.171±0.00 1.762±0.00 2.857±0.00 3.686±1.75 6.174±2.55 N/A
ENST00000438825 N/A N/A N/A N/A N/A N/A 0.367±0.00 1.805±0.00 N/A N/A 2.192±0.00 N/A N/A N/A
ENST00000441402 5.357±0.00 8.118±0.00 0.203±0.00 2.516±0.00 1.896±1.65 1.714±0.85 0.116±0.00 2.107±0.00 0.596±0.00 4.020±0.00 2.491±0.00 6.312±0.46 3.200±0.59 6.327±3.48
ENST00000468135 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A 0.286±0.00 N/A N/A
ENST00000472503 2.185±0.00 N/A 0.334±0.00 1.205±0.00 N/A 0.397±0.00 N/A N/A N/A N/A N/A 1.368±0.00 N/A N/A
ENST00000476968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.252±0.00 N/A 2.379±0.00
ENST00000487305 N/A N/A N/A N/A N/A N/A N/A N/A 0.267±0.00 N/A N/A N/A N/A N/A
ENST00000498613 N/A N/A 0.479±0.00 N/A N/A 0.767±0.00 N/A 2.600±0.00 1.435±0.00 0.679±0.00 1.351±0.00 1.178±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018956 tmem39b transmembrane protein 39B protein_coding Danio_rerio
ENSMUSG00000053730 Tmem39b transmembrane protein 39b protein_coding Mus_musculus

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