C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUB and Sushi multiple domains 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121904 CSMD2 9606 - 1:33513999-34165842 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000241312 CSMD2-001 33514009-34165842 nonsense_mediated_decay
  ENST00000338325 CSMD2-004 33772108-33814219 protein_coding
  ENST00000373377 CSMD2-003 33598689-33626584 protein_coding
  ENST00000373380 CSMD2-002 33591807-33709504 protein_coding
  ENST00000373381 CSMD2-201 33513999-34165274 protein_coding
  ENST00000373388 CSMD2-202 33513999-34165842 protein_coding
  ENST00000465819 CSMD2-006 33559353-33572590 processed_transcript
  ENST00000471438 CSMD2-007 33792497-33819808 processed_transcript
  ENST00000489419 CSMD2-005 33598689-33602477 processed_transcript
  ENST00000619121 CSMD2-203 33513999-34165842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000241312ENST00000338325ENST00000373377ENST00000373380ENST00000373381ENST00000373388ENST00000489419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000241312 0.007±0.00 N/A N/A N/A N/A 0.019±0.00 0.007±0.00 0.022±0.00 N/A 0.022±0.00 N/A 0.057±0.00 0.006±0.00 N/A
ENST00000338325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A
ENST00000373377 N/A N/A N/A N/A 0.032±0.00 0.102±0.00 N/A N/A 0.277±0.00 0.029±0.00 0.088±0.00 N/A N/A 0.195±0.04
ENST00000373380 0.016±0.00 0.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373381 N/A N/A N/A 0.256±0.00 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373388 N/A N/A N/A 0.478±0.00 N/A 0.017±0.00 0.003±0.00 N/A N/A N/A N/A N/A 0.004±0.00 N/A
ENST00000489419 0.072±0.00 0.179±0.00 0.200±0.00 N/A N/A N/A 0.031±0.00 0.081±0.00 0.005±0.00 N/A N/A 0.088±0.03 0.039±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346
CIL_0001N2 CIL_0001N2_0001 CGP 1:33513999-34165842

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001559 csmd2 CUB and Sushi multiple domains 2 protein_coding Danio_rerio
ENSMUSG00000028804 Csmd2 CUB and Sushi multiple domains 2 protein_coding Mus_musculus

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