C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycosyltransferase-like domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121964 GTDC1 9606 - 2:143938068-144332568 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000241391 GTDC1-201 143946016-144211579 protein_coding
  ENST00000344850 GTDC1-202 143946016-144295318 protein_coding
  ENST00000392867 GTDC1-002 143946014-144237341 protein_coding
  ENST00000392869 GTDC1-001 143938068-144235740 protein_coding
  ENST00000392871 GTDC1-008 143946023-144211582 nonsense_mediated_decay
  ENST00000409214 GTDC1-006 143945754-144294493 protein_coding
  ENST00000409298 GTDC1-007 143946016-144235737 protein_coding
  ENST00000415569 GTDC1-005 143946033-144235739 nonsense_mediated_decay
  ENST00000417450 GTDC1-016 144145620-144319870 protein_coding
  ENST00000429978 GTDC1-015 144178834-144332568 nonsense_mediated_decay
  ENST00000437114 GTDC1-011 144141882-144235737 protein_coding
  ENST00000463875 GTDC1-004 143946827-144332516 protein_coding
  ENST00000467352 GTDC1-017 144210835-144319870 processed_transcript
  ENST00000476958 GTDC1-014 144007334-144145905 processed_transcript
  ENST00000482601 GTDC1-013 144127924-144178936 processed_transcript
  ENST00000482961 GTDC1-009 143950945-143952053 processed_transcript
  ENST00000484303 GTDC1-012 144178308-144235739 retained_intron
  ENST00000491448 GTDC1-003 144005751-144235737 retained_intron
  ENST00000542155 GTDC1-203 143946016-144332534 protein_coding
  ENST00000618778 GTDC1-204 143946016-144177217 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000241391ENST00000344850ENST00000392867ENST00000392869ENST00000392871ENST00000409214ENST00000409298ENST00000417450ENST00000484303ENST00000491448ENST00000542155ENST00000618778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000241391 N/A N/A N/A N/A N/A N/A N/A 1.782±0.00 0.587±0.00 N/A N/A 1.206±0.00 0.766±0.00 2.155±0.00
ENST00000344850 5.151±0.00 N/A 0.547±0.00 N/A 2.126±0.00 N/A 1.462±0.00 N/A 1.384±0.00 N/A N/A 2.431±2.19 1.897±0.41 2.610±0.00
ENST00000392867 N/A N/A N/A N/A N/A N/A 0.751±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000392869 N/A N/A 0.115±0.00 1.809±0.08 N/A N/A 0.454±0.00 N/A N/A 0.608±0.00 0.136±0.00 0.718±0.00 0.219±0.06 N/A
ENST00000392871 N/A 2.293±0.00 N/A N/A 3.730±0.00 1.923±0.00 2.060±1.24 N/A N/A 5.509±0.00 0.957±0.00 N/A 1.122±0.00 2.282±0.00
ENST00000409214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.128±0.00 N/A N/A
ENST00000409298 N/A 1.985±0.00 N/A 6.553±0.00 3.096±0.96 1.626±0.27 N/A 1.395±0.76 1.423±0.65 2.376±0.00 0.987±0.00 1.759±0.00 1.388±0.53 3.279±0.39
ENST00000417450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.542±0.00 N/A N/A N/A
ENST00000484303 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.231±0.00 N/A N/A N/A N/A
ENST00000491448 N/A 1.362±0.00 2.083±0.00 N/A 2.181±0.00 2.759±0.00 N/A N/A N/A 2.446±0.00 N/A 0.330±0.00 N/A 1.426±0.00
ENST00000542155 2.420±0.00 1.359±0.00 N/A N/A N/A N/A N/A 1.228±0.00 0.669±0.00 N/A N/A N/A N/A 2.217±0.00
ENST00000618778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.962±0.66 0.523±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006M8 CIL_0006M8_0001 CGP 2:143091362-144332568
CIL_0008S0 CIL_0008S0_0001 VISTA 2:143654622-144256346
CIL_0007L9 CIL_0007L9_0003 UCNEbase 2:143915206-145198080
CIL_0006M9 CIL_0006M9_0001 CGP 2:143938068-144524580

Gene Ontology
GO IDEvidence TypeGO Description
GO:0009058 IEA biosynthetic process
GO:0016740 IEA transferase activity
GO:0016757 IEA transferase activity, transferring glycosyl groups

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020642 gtdc1 glycosyltransferase-like domain containing 1 protein_coding Danio_rerio
ENSMUSG00000036890 Gtdc1 glycosyltransferase-like domain containing 1 protein_coding Mus_musculus

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