C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine active site containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122335 SERAC1 9606 - 6:158109515-158168270 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367101 SERAC1-002 158114731-158168259 protein_coding
  ENST00000367104 SERAC1-001 158109515-158168270 protein_coding
  ENST00000435180 SERAC1-003 158114691-158119061 protein_coding
  ENST00000606965 SERAC1-004 158114471-158168171 nonsense_mediated_decay
  ENST00000607000 SERAC1-007 158145920-158159298 protein_coding
  ENST00000607071 SERAC1-008 158110627-158166159 nonsense_mediated_decay
  ENST00000607742 SERAC1-005 158109691-158168246 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367101ENST00000367104ENST00000435180ENST00000607000ENST00000607071ENST00000607742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367101 N/A N/A N/A N/A N/A 1.005±0.00 N/A N/A N/A N/A 0.705±0.00 N/A N/A 3.063±0.00
ENST00000367104 1.249±0.00 0.118±0.00 0.726±0.00 1.901±0.18 0.723±0.17 N/A 0.475±0.09 1.850±0.77 0.712±0.10 1.053±0.16 0.359±0.00 7.062±5.04 0.787±0.12 2.949±0.53
ENST00000435180 N/A N/A 1.412±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607000 N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.987±0.00
ENST00000607742 N/A 0.143±0.00 N/A 0.471±0.23 N/A N/A 0.107±0.00 N/A 0.370±0.00 0.442±0.00 N/A 1.971±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055M CIL_00055M_0001 CGP 6:157981887-158168270
CIL_00055L CIL_00055L_0001 CGP 6:158109515-158199344

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0006505 IEA GPI anchor metabolic process
GO:0006886 IEA intracellular protein transport
GO:0008654 IEA phospholipid biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0030198 IEA extracellular matrix organization
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056121 serac1 serine active site containing 1 protein_coding Danio_rerio
ENSMUSG00000015659 Serac1 serine active site containing 1 protein_coding Mus_musculus

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