C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox homolog 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122565 CBX3 9606 + 7:26201162-26213356 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337620 CBX3-001 26201162-26213356 protein_coding
  ENST00000396386 CBX3-002 26201693-26213351 protein_coding
  ENST00000409747 CBX3-003 26201765-26213356 protein_coding
  ENST00000456948 CBX3-004 26201757-26208412 protein_coding
  ENST00000462165 CBX3-006 26206368-26210582 protein_coding
  ENST00000481057 CBX3-005 26208133-26212423 retained_intron
  ENST00000481300 CBX3-007 26206036-26208476 retained_intron
  ENST00000497498 CBX3-008 26202463-26211717 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000396386
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000396386 24.180±0.00 6.027±0.00 22.957±13.23 19.834±8.01 25.226±11.99 3.988±0.00 35.092±27.38 15.055±5.84 40.490±0.00 3.779±0.00 41.627±18.16 34.439±3.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0002CP CIL_0002CP_0001 CGP 7:26152240-26201529
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0002CO CIL_0002CO_0001 CGP 7:26189927-26213356
CIL_0007OD CIL_0007OD_0001 UCNEbase 7:26191819-26506343
CIL_0002CN CIL_0002CN_0001 CGP 7:26201162-26374329

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000779 ISS condensed chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005635 ISS nuclear envelope
GO:0005637 NAS nuclear inner membrane
GO:0005719 IDA nuclear euchromatin
GO:0005720 IDA nuclear heterochromatin
GO:0005819 IDA spindle
GO:0006338 NAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0019899 IPI enzyme binding
GO:0019904 IPI protein domain specific binding
GO:0031618 ISS nuclear pericentric heterochromatin
GO:0042802 IPI identical protein binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process
GO:1990226 IPI histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003860 cbx3a chromobox homolog 3a (HP1 gamma homolog, Drosophila) protein_coding Danio_rerio
ENSMUSG00000029836 Cbx3 chromobox 3 protein_coding Mus_musculus

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