C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A2/B1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122566 HNRNPA2B1 9606 - 7:26189927-26201529 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354667 HNRNPA2B1-001 26189927-26200746 protein_coding
  ENST00000356674 HNRNPA2B1-002 26191844-26200746 protein_coding
  ENST00000360787 HNRNPA2B1-006 26190125-26200746 nonsense_mediated_decay
  ENST00000463181 HNRNPA2B1-003 26190304-26200784 retained_intron
  ENST00000476233 HNRNPA2B1-007 26189927-26191678 processed_transcript
  ENST00000490912 HNRNPA2B1-004 26191849-26201529 retained_intron
  ENST00000495810 HNRNPA2B1-008 26195712-26196907 retained_intron
  ENST00000618183 HNRNPA2B1-201 26189936-26200793 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354667ENST00000356674ENST00000360787ENST00000463181ENST00000618183
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.401±0.00 N/A N/A
ENST00000356674 152.434±0.00 422.626±0.00 10.578±0.00 116.997±106.47 88.911±75.65 140.785±122.48 112.167±106.07 193.129±176.33 69.375±62.09 263.744±0.00 82.937±66.91 348.427±240.40 298.777±139.63 556.989±60.65
ENST00000360787 28.841±0.00 N/A N/A N/A 37.372±0.00 N/A N/A N/A N/A N/A 31.143±0.00 N/A N/A N/A
ENST00000463181 N/A N/A 7.626±0.00 2.680±0.00 11.353±0.00 9.243±0.00 2.440±0.00 6.505±0.00 8.320±0.00 16.830±0.00 1.769±0.00 10.965±0.00 N/A N/A
ENST00000618183 N/A N/A N/A N/A 5.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0002CP CIL_0002CP_0001 CGP 7:26152240-26201529
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0002CO CIL_0002CO_0001 CGP 7:26189927-26213356

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IDA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0043047 IDA single-stranded telomeric DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0050658 IDA RNA transport
GO:0071013 IDA catalytic step 2 spliceosome
GO:0097157 IEA pre-mRNA intronic binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000004980 Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 protein_coding Mus_musculus

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