C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caldesmon 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122786 CALD1 9606 + 7:134744252-134970728 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361675 CALD1-005 134779650-134969346 protein_coding
  ENST00000361901 CALD1-001 134779678-134970641 protein_coding
  ENST00000393118 CALD1-201 134891400-134970728 protein_coding
  ENST00000417172 CALD1-002 134744252-134968402 protein_coding
  ENST00000422748 CALD1-003 134779420-134968859 protein_coding
  ENST00000424922 CALD1-010 134891610-134968859 protein_coding
  ENST00000430085 CALD1-004 134779637-134968653 nonsense_mediated_decay
  ENST00000435928 CALD1-020 134866841-134928900 protein_coding
  ENST00000436461 CALD1-012 134745467-134960056 protein_coding
  ENST00000443197 CALD1-009 134891458-134970641 nonsense_mediated_decay
  ENST00000445569 CALD1-027 134843884-134933123 protein_coding
  ENST00000454108 CALD1-017 134779625-134928900 protein_coding
  ENST00000462181 CALD1-016 134779639-134822061 processed_transcript
  ENST00000466704 CALD1-015 134950375-134968875 processed_transcript
  ENST00000472096 CALD1-024 134941182-134948102 retained_intron
  ENST00000473714 CALD1-025 134960531-134965437 retained_intron
  ENST00000475772 CALD1-019 134779634-134868241 retained_intron
  ENST00000478075 CALD1-023 134941141-134944551 processed_transcript
  ENST00000480638 CALD1-028 134965211-134968723 retained_intron
  ENST00000482470 CALD1-008 134779650-134962389 retained_intron
  ENST00000489019 CALD1-026 134843884-134900053 processed_transcript
  ENST00000495522 CALD1-029 134891610-134968859 protein_coding
  ENST00000496024 CALD1-021 134920566-134933242 processed_transcript
  ENST00000498254 CALD1-018 134779715-134867975 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361675ENST00000361901ENST00000393118ENST00000443197ENST00000454108ENST00000472096ENST00000482470
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361675 N/A N/A N/A N/A N/A N/A 12.116±0.00 N/A N/A N/A 7.363±0.00 N/A N/A
ENST00000361901 44.467±0.00 3.785±0.00 0.458±0.00 27.399±8.58 11.404±0.00 6.953±5.53 21.032±18.13 42.481±29.72 37.414±29.01 6.821±0.00 56.677±33.59 94.096±34.75 20.435±0.00
ENST00000393118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.222±0.00 N/A N/A
ENST00000443197 N/A N/A 0.779±0.00 13.380±0.00 N/A 9.185±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000454108 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.227±0.00 N/A N/A N/A
ENST00000472096 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.756±0.00 N/A N/A N/A
ENST00000482470 N/A N/A N/A N/A N/A 1.029±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024W CIL_00024W_0002 CGP 7:134646808-134970728
CIL_0002H0 CIL_0002H0_0001 CGP 7:134744252-135147963

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005523 TAS tropomyosin binding
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006928 TAS cellular component movement
GO:0006936 IEA:TAS muscle contraction
GO:0015629 IDA actin cytoskeleton
GO:0016020 IEA membrane
GO:0017022 IEA myosin binding
GO:0030478 IEA actin cap

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070314 cald1l caldesmon 1 like protein_coding Danio_rerio
ENSDARG00000086391 cald1 caldesmon 1 protein_coding Danio_rerio
ENSMUSG00000029761 Cald1 caldesmon 1 protein_coding Mus_musculus

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