C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122965 RBM19 9606 - 12:113816738-113966371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261741 RBM19-001 113822057-113966371 protein_coding
  ENST00000392561 RBM19-002 113822054-113966310 protein_coding
  ENST00000545145 RBM19-003 113816742-113966306 protein_coding
  ENST00000546876 RBM19-004 113957863-113966209 processed_transcript
  ENST00000552384 RBM19-006 113822687-113858904 nonsense_mediated_decay
  ENST00000552386 RBM19-005 113914969-113927431 retained_intron
  ENST00000553232 RBM19-007 113816738-113818179 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261741ENST00000392561ENST00000545145ENST00000552384ENST00000553232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261741 2.596±0.00 3.687±0.00 1.465±0.00 1.107±0.04 1.833±0.15 2.806±0.01 1.115±0.51 1.657±1.29 1.343±0.00 3.509±0.82 3.560±0.00 2.695±1.16 3.504±1.49 2.102±0.95
ENST00000392561 2.316±0.00 1.874±0.00 0.615±0.00 1.778±0.00 0.889±0.00 2.875±0.00 1.293±1.03 0.522±0.00 2.236±0.00 N/A 8.596±0.00 3.138±0.00 2.614±0.51 2.944±0.43
ENST00000545145 1.287±0.00 4.018±0.00 N/A 1.322±0.59 2.445±0.00 N/A 0.661±0.49 2.026±0.00 0.562±0.04 1.837±0.00 N/A 2.171±0.93 0.579±0.00 1.582±0.30
ENST00000552384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.149±0.00 21.708±0.00 11.451±0.00 17.155±0.00
ENST00000553232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.673±0.00 6.500±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000842 CIL_000842_0001 VISTA 12:113363390-113966000
CIL_000875 CIL_000875_0001 VISTA 12:113632311-114233611
CIL_0008LK CIL_0008LK_0001 VISTA 12:113632321-114234251

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005694 IEA chromosome
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0016020 IDA membrane
GO:0040019 ISS positive regulation of embryonic development
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042590 rbm19 RNA binding motif protein 19 protein_coding Danio_rerio
ENSMUSG00000029594 Rbm19 RNA binding motif protein 19 protein_coding Mus_musculus

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