C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatogenesis associated, serine-rich 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123352 SPATS2 9606 + 12:49366584-49527424 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321898 SPATS2-001 49367475-49527419 protein_coding
  ENST00000547003 SPATS2-020 49522749-49526198 processed_transcript
  ENST00000547865 SPATS2-002 49367547-49463625 protein_coding
  ENST00000548377 SPATS2-009 49366962-49461037 protein_coding
  ENST00000548388 SPATS2-011 49367547-49461229 retained_intron
  ENST00000548654 SPATS2-015 49366905-49461037 protein_coding
  ENST00000548710 SPATS2-021 49366909-49489561 protein_coding
  ENST00000548727 SPATS2-014 49514442-49522853 retained_intron
  ENST00000548777 SPATS2-010 49367518-49484663 protein_coding
  ENST00000549045 SPATS2-013 49460879-49494944 nonsense_mediated_decay
  ENST00000549179 SPATS2-017 49366929-49461028 protein_coding
  ENST00000549298 SPATS2-018 49367384-49484673 protein_coding
  ENST00000549375 SPATS2-006 49367462-49491159 retained_intron
  ENST00000549412 SPATS2-003 49366905-49526365 nonsense_mediated_decay
  ENST00000549538 SPATS2-022 49366856-49489559 protein_coding
  ENST00000550643 SPATS2-023 49366905-49484668 protein_coding
  ENST00000550997 SPATS2-012 49366584-49494771 protein_coding
  ENST00000551540 SPATS2-016 49367496-49490691 protein_coding
  ENST00000552171 SPATS2-019 49367547-49484595 protein_coding
  ENST00000552557 SPATS2-008 49490115-49514613 processed_transcript
  ENST00000552655 SPATS2-007 49490122-49496889 processed_transcript
  ENST00000552918 SPATS2-005 49367510-49527226 protein_coding
  ENST00000553127 SPATS2-004 49367465-49527424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321898ENST00000547003ENST00000549045ENST00000549298ENST00000549412ENST00000549538ENST00000550643ENST00000550997ENST00000552557ENST00000552918ENST00000553127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321898 1.447±0.00 N/A N/A 1.030±0.63 1.634±0.00 2.562±0.00 0.685±0.00 1.313±0.00 0.704±0.00 0.784±0.00 0.314±0.00 3.495±0.85 2.273±0.53 6.440±0.75
ENST00000547003 N/A N/A N/A N/A N/A N/A 2.050±0.00 N/A 1.580±0.00 N/A N/A N/A N/A N/A
ENST00000549045 N/A N/A 0.496±0.00 N/A N/A N/A N/A N/A N/A N/A 1.449±0.00 N/A N/A N/A
ENST00000549298 N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000549412 0.978±0.00 1.693±0.00 0.545±0.00 2.053±0.00 N/A N/A N/A N/A 0.426±0.00 1.246±0.00 N/A 3.292±2.45 2.156±0.00 8.670±4.54
ENST00000549538 N/A N/A 1.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550643 N/A N/A N/A 4.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550997 N/A N/A N/A N/A N/A N/A N/A N/A 1.433±0.00 N/A N/A N/A N/A N/A
ENST00000552557 N/A N/A N/A N/A N/A 2.900±0.00 0.182±0.00 0.619±0.00 N/A 2.477±0.00 N/A N/A N/A N/A
ENST00000552918 1.079±0.00 N/A N/A 2.020±0.40 0.894±0.00 2.309±0.60 0.195±0.03 2.198±0.00 0.682±0.00 1.747±1.25 0.283±0.05 2.374±1.11 1.674±1.15 11.925±7.07
ENST00000553127 N/A 0.845±0.00 N/A 0.875±0.00 1.039±0.13 N/A N/A N/A N/A N/A N/A N/A N/A 1.818±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GQ CIL_0007GQ_0001 CGP 12:49346917-49527424
CIL_00009M CIL_00009M_0001 CGP 12:49366584-49558308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067969 SPATS2 (1 of 2) spermatogenesis associated, serine-rich 2 protein_coding Danio_rerio
ENSDARG00000087781 SPATS2 (2 of 2) spermatogenesis associated, serine-rich 2 protein_coding Danio_rerio
ENSMUSG00000051934 Spats2 spermatogenesis associated, serine-rich 2 protein_coding Mus_musculus

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